Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32g00024 ATGGCTATCGGCAAAGAAACAATGCAACAAGAACAAGAGAAGAAGAAGGAGGAGTTCATCTTCAAGTCAAGGCTTCCAGACATCTACATCCCCAACCACCTTCCCCTCCATTCCTACATCTTCCAAGACCTTGACCACTTCGCCACCCATCCATGCCTCATCAATGCCCCAACAGGACAAGTATTCACCTACTCCGACGTCCACCTCAAGGCCAGGAGAGTCGCATCTGGCCTCAACAAACTCGGCATCCGCCAGGCTGACGTCATCATGATCCTCCTCCCCAACTCTCCTCAATTCGTCTTCTCCTTCCTGGGCGCATCCTTCCGGGGTGCCATCGCCACCGCCGCCAATCCCTTCTTCACGCCCGCCGAGATAGCAAAGCAGGCCAAGGCCTCCAACGCCAGGCTGCTCGTAACGCAGTCCAGTTACTACGACAAGGTGAAGGACCTCGATGGCCACCTCACCCTGGTGTTCGTGGACACTCCTCCGGAGAAGCACCTGCTGCATTTCTCTGAGCTGGAAGAGGCGGATGAGGGGGAGATCCCGGAGGTGGAGATCAGGCCAGATGACGTGGTGGCCCTGCCGTACTCGTCGGGAACGACAGGGCTGCCTAAAGGCGTGATGCTGACTCACAAGGGGTTGGTGACGAGCGTGGGGCAGCAGGTTGATGGTGATAACCCAAACCTTTATTATCACAGCGCTGATGTCATCATGTGTGTGCTTCCCATGTTCCACATATACTCCCTCAACTCTGTCCTCCTCTGCGGACTCAGGGCCAAGGCTACCATCATCTTGATGCCCAAATTCGACATCACTGCTTTTCTGGGCTTAGTGGAGAAGCATGGGGTCACCATATGCCCCGTGGTGCCTCCCATCATTCTTGCCATCGCCAAGTGCCCCGATCTTCACAACTACAATCTTTCTTCCATCAGAGTCCTTAAATCTGGTGGGGCTCCCCTTGGCAAGGACCTTGAACACACTGTCCGCCTCAAATTCCCCAACGCCAAGCTTGGACAGGGATACGGGATGACAGAGGCGGGTCCAGTGTTAACAATGTGTTTAACATTCGCTAAAGAAGCCATTGACGGAAAACCAGGTGCATGCGGCACCGTTGTCAGAAACGCAGAGATGAAGATTGTTGATCCTGAAACTGAAAATTCTCTTCCCAGAAACCAACCTGGTGAAATCTGTATTAGAGGCGACCAGATCATGAAAGGTTATCTAAACGATCCGGAGTCAACAGAGCGAACAATAGACAAGGAAGGGTGGTTGCACACAGGTGACATTGGTTACATCGACGATGATGATGAGCTCTTCATCGTTGATAGGCTCAAAGAATTGATCAAATACAAAGGCTTCCAAGTTGCTCCTGCTGAACTCGAAGCCCTCCTTCTTTCTCATCCTAAAATTTCTGATGCTGCTGTAGTCCCGATGAAGGACGAAGCAGCTGGGGAGGTGCCAGTTGCATTTGTGGTCGCAGCAAATGGCCACACTGACACAACTGAGGATGAAATTAAGCAATTCGTCTCCAAACAGGTGGTGTTTTACAAGAGAATTAACCGAGTATTCTTCGTTGATGCCATTCCAAAGTCACCCTCTGGCAAAATATTACGAAAGGATCTAAGGGCAAGGCTCGCACTCCCTCTTCCAAATTAA 1656 0.5151 MAIGKETMQQEQEKKKEEFIFKSRLPDIYIPNHLPLHSYIFQDLDHFATHPCLINAPTGQVFTYSDVHLKARRVASGLNKLGIRQADVIMILLPNSPQFVFSFLGASFRGAIATAANPFFTPAEIAKQAKASNARLLVTQSSYYDKVKDLDGHLTLVFVDTPPEKHLLHFSELEEADEGEIPEVEIRPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVGQQVDGDNPNLYYHSADVIMCVLPMFHIYSLNSVLLCGLRAKATIILMPKFDITAFLGLVEKHGVTICPVVPPIILAIAKCPDLHNYNLSSIRVLKSGGAPLGKDLEHTVRLKFPNAKLGQGYGMTEAGPVLTMCLTFAKEAIDGKPGACGTVVRNAEMKIVDPETENSLPRNQPGEICIRGDQIMKGYLNDPESTERTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLLSHPKISDAAVVPMKDEAAGEVPVAFVVAANGHTDTTEDEIKQFVSKQVVFYKRINRVFFVDAIPKSPSGKILRKDLRARLALPLPN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32g00024 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 445 - -
Stsc32g00024 551 CDD 4CL 30 541 - -
Stsc32g00024 551 Gene3D - 13 444 IPR042099 -
Stsc32g00024 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 16 543 - -
Stsc32g00024 551 Gene3D - 445 546 IPR045851 -
Stsc32g00024 551 SUPERFAMILY Acetyl-CoA synthetase-like 24 545 - -
Stsc32g00024 551 Pfam AMP-binding enzyme C-terminal domain 459 535 IPR025110 -
Stsc32g00024 551 ProSitePatterns Putative AMP-binding domain signature. 194 205 IPR020845 -
Stsc32g00024 551 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Stsc32g00024 551 Pfam AMP-binding enzyme 47 450 IPR000873 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32g00024 Stsc-Chr32 87616 90562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32g00024 6 513 Monolignol Biosynthesis Gene Families AT1G51680 68.147 0.0 698
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32g00024 K01904 - qsa:O6P43_027979 856.67