LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc32g00021	ATGAAGGATAAAGAAAAGGACAAGGAAAAAGAGGCGGAGAAGAAGAAGTACCCTATCGGTGCCGAGCATTACGATCTCTACGAGGAGATTGGACACGGTGTCAGTGCCGCCGTCCACCGTGCGCTCTGCATCCCCCTCAACGAGGTCATCGCCATCAAGATCCTCGACTTCGAACGCGACAACTGCGATCTGAACAATGTTTCACGCGAAGCGCAGACCATGGTGCTGGTGGACCACCCAAACGTCCTGAAATCGCATTGCTCCTTCGTCCACGAGCACAGCCTGTGGGTTGTGATGCCGTACATGGCGGGGGGATCGTGCCTCCACATCCTCAAGGCGGCGCACCCCGACGGATTCGAGGAGGTTGTGATTGCCACCATCCTTCGCGAGGTCCTCAAGGGCTTAGAGTACCTTCACCACCACGGACACATCCACAGGGACGTCAAGTCCGGCAACATTCTCATCGATTCCCGAGGCGCCATCAAGCTCGGCGACTTCGGCGTCTCTGCCTGTCTCTTTGATTCCGGTGATAGGCAACGCACCAGGAATACTTTTGTAGGAACACCTTGTTGGATGGCACCAGAAGTAATGGAGCAGCTGCATGGTTATAACTTCAAAGCTGACATTTGGTCATTTGGCATAACTGCACTAGAGCTTGCCCACGGTCATGCTCCTTTCTCAAAGTTTCCACCCATGAAGGTACTACTTATGACTTTGCAAAATGCACCCCCAGGCCTTGACTACGAGAGGGATAGAAAGTTCTCTAAGTCATTTAAGCAGATGATTGCTAGTTGCTTAGTGAAAGATCCTTCAAAACGACCCTCTGCAAGCAAGTTGTTGAAGCATTCCTTCTTCAAGCAGGCTCGCTCCAATGATTATATTTCACGAACACTTTTGGAGGGGCTTCCTGCTTTAGGTGATCGCATGCAGGCCCTAAAGAGAAAAGATGAAGATATGCTTGCACAAAAGAGAATGCCCGATGGGGAGATGGAGGAATTATCACAGAATGAATACAAACGGGGAATTAGTGGCTGGAACTTCAATCTTGATGATATGAAAGCTCAGGCTTCATTGATCCATGATTTTGATGATGCTATATCAGATATCAATCATGAAGATATTGATGAGATACAAAATCAATCAGCTTCTGTTCCAGCAATTGATTCCACTGTGAATGATGCCAAGATAAAGTTTGAAAAATACGATGATGACTCTAGCATTACCAGTTCAAGCCATGAACAAAGCATTTCACAAGCTTCTCCATCCTGTCTTGATGATCGTGTGGACCATAATGTGGGAGAAAAATCTGATGTGGAAAATGGTGGAAGATCTGTAGAGGGCATGGCTATCCATTCTTTTCATAGAAGAGGATCTTCATCAAGCATTTTACCTGAAGTAACTCTTCCACCAATTCGACCAGAAAGTGAGAAGGCAACCTATGTGCCCCAGAGCACCTCAAGTGGCAACACAAATTCACAGACAGGAGAGGACGTTCTTACTGAACTTCCTTCTAAAGTCTCAAAATCATCAGCTAACGCTGAAGAGACTGATGAGAAAGCAAAGATACCAGTTGTTCAGCAGAGAGGACGTTTTAAGGTTACATCTGAGAATGTTGATCCAGAAAAGGTGGCCCCTACTCCTGTACTGCAAAAGAGTCACAGTATGCAGATTATTAGCCAGCATAGTGCTCCTCCTCCTCTGCCTTCACCTGTACCGTTACTGCCAATATCTGATGCTGCTATATCATCAAATCTTTCTGGTTGTTCTCTTTTCCCAGTGTTGCACTCTGTGCTGCAGACAAATATTCTCCAACGGGAAAGCATTTTAAATTTAATGAAGCAAATCAGTGCCAGTGACACCACAGCTGATGCCACATGTATCCCGGCACAAATTGCAGCTGTTGAGAAATCTTTGCTTGAAGCAGCTCACGATAGGGAGAAAGAGTTACTCCATGAGATAACTGAGTTGCAGTGGAGGCTGATATGTACCCAAGAGGAGCTTCAAAAATTGAAGACAGATAATGCTCAGGTATGA	2034	0.4636	MKDKEKDKEKEAEKKKYPIGAEHYDLYEEIGHGVSAAVHRALCIPLNEVIAIKILDFERDNCDLNNVSREAQTMVLVDHPNVLKSHCSFVHEHSLWVVMPYMAGGSCLHILKAAHPDGFEEVVIATILREVLKGLEYLHHHGHIHRDVKSGNILIDSRGAIKLGDFGVSACLFDSGDRQRTRNTFVGTPCWMAPEVMEQLHGYNFKADIWSFGITALELAHGHAPFSKFPPMKVLLMTLQNAPPGLDYERDRKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYISRTLLEGLPALGDRMQALKRKDEDMLAQKRMPDGEMEELSQNEYKRGISGWNFNLDDMKAQASLIHDFDDAISDINHEDIDEIQNQSASVPAIDSTVNDAKIKFEKYDDDSSITSSSHEQSISQASPSCLDDRVDHNVGEKSDVENGGRSVEGMAIHSFHRRGSSSSILPEVTLPPIRPESEKATYVPQSTSSGNTNSQTGEDVLTELPSKVSKSSANAEETDEKAKIPVVQQRGRFKVTSENVDPEKVAPTPVLQKSHSMQIISQHSAPPPLPSPVPLLPISDAAISSNLSGCSLFPVLHSVLQTNILQRESILNLMKQISASDTTADATCIPAQIAAVEKSLLEAAHDREKELLHEITELQWRLICTQEELQKLKTDNAQV	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc32g00021	677	ProSitePatterns	Protein kinases ATP-binding region signature.	30	53	IPR017441	GO:0005524
	Stsc32g00021	677	FunFam	serine/threonine-protein kinase BLUS1 isoform X1	105	338	-	-
	Stsc32g00021	677	MobiDBLite	consensus disorder prediction	427	441	-	-
	Stsc32g00021	677	MobiDBLite	consensus disorder prediction	405	444	-	-
	Stsc32g00021	677	SMART	serkin_6	24	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc32g00021	677	Gene3D	Transferase(Phosphotransferase) domain 1	105	336	-	-
	Stsc32g00021	677	CDD	STKc_OSR1_SPAK	22	285	-	-
	Stsc32g00021	677	Gene3D	Phosphorylase Kinase; domain 1	12	100	-	-
	Stsc32g00021	677	SUPERFAMILY	Protein kinase-like (PK-like)	22	286	IPR011009	-
	Stsc32g00021	677	MobiDBLite	consensus disorder prediction	453	472	-	-
	Stsc32g00021	677	MobiDBLite	consensus disorder prediction	478	496	-	-
	Stsc32g00021	677	MobiDBLite	consensus disorder prediction	501	521	-	-
	Stsc32g00021	677	Pfam	Protein kinase domain	24	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc32g00021	677	ProSiteProfiles	Protein kinase domain profile.	24	285	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc32g00021	677	PANTHER	SERINE/THREONINE-PROTEIN KINASE FRAY2	13	672	IPR047173	GO:0043539
	Stsc32g00021	677	Coils	Coil	653	673	-	-
	Stsc32g00021	677	MobiDBLite	consensus disorder prediction	408	424	-	-
	Stsc32g00021	677	MobiDBLite	consensus disorder prediction	477	496	-	-
	Stsc32g00021	677	FunFam	Serine/threonine-protein kinase BLUS1	13	101	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc32g00021	Stsc-Chr32	70543	76792	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc32g00021	13	659	MAP Kinase Kinase Kinase Kinase	AT1G79640	62.963	0.0	830

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE20-Fray	Stsc32g00021		Pkinase	1.9e-58	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc32g00021	K08835		-	gmx:100780339	1078.93