Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32g00020 ATGAAACTCACTGTTAAGACTTTGAAAGGCAGCCATTTCGAAATTAGGGTTCAGCCATCCGACACTATTATGGCTGTCAAGAAGAATATAGAAGATGTGCAAGGCAAATATAATTACCCATGTGGACAACAGTTGCTTATTCACAATGGCAAGGTTTTGAAAGATGAAACTACATTAGCAGAGAACAAGGTCTCTGAGGATGGATTTCTTGTTGTTATGCTTAGCAAGAGTAAAACATTGGGTTCGGCTGGGACTTCATCTGCCCAGCCTGCCAGCAATCCACCTGCAGCTGTATCAACCTCAAATTCCACGCCTGCTCCTGAACCTCCGGCACAAACTCAGGATGCAAACAATAGTACATCTGGCCCGGCTGTCACAACTACAAATACAAATGTATCTGCAGATACTTATGGCCAGGCTGCTTCAAATTTAGTTGGTGGTAGTAATCTTGAGCAGACTATTCAACAAATTATGGACATGGGTGGTGGCAACTGGGACAGAGATACAGTTACTCGTGCTCTTCGGGCAGCTTACAATAATCCAGAGCGTGCTATAGACTACTTGTACTCTGGTATCCCTGAAGCAGCAGAAGTTGCTGTACCAGTTCCTCACTTCCCAGGTAGTCAGACAACTGAAACAGCTGGGGTCACTGCTGGGGCAGTTACTGGACTACCTAACTCATCTCCCTTAAATATGTTTCCACAGGAGACAATTTCTGGTGCTGGTCCTGGACTAGGATCTCTTGAATTCCTCAGAAACAATGCCCAGTTTCAAGCATTGCGTTCAATGGTGCAATCAAATCCACAAATTTTACAGCCTGTGCTTCAAGAACTTGGAAAGCAGAATCCCAATCTTTTAAGACTGATTCAAGAGCATCATGCTGAGTTTCTACAGTTGATAAACGAACCTGTTGAGGGTTCGGAAGGTGATATATTTGACCAGCCTGAGCAGGACATGCCACATGCCATCAATGTGACTCCAGCTGAGCAGGAGGCAATTGCAAGGCTTGAGGCAATGGGATTTGATAGAGCCTCAGTCATAGAGGCGTTTTTGGCGTGTGACCGTGATGAGCAATTGGCAGCCAACTACTTATTGGAGAATGCTGGAGATTTTGAGGATTAG 1122 0.4492 MKLTVKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKYNYPCGQQLLIHNGKVLKDETTLAENKVSEDGFLVVMLSKSKTLGSAGTSSAQPASNPPAAVSTSNSTPAPEPPAQTQDANNSTSGPAVTTTNTNVSADTYGQAASNLVGGSNLEQTIQQIMDMGGGNWDRDTVTRALRAAYNNPERAIDYLYSGIPEAAEVAVPVPHFPGSQTTETAGVTAGAVTGLPNSSPLNMFPQETISGAGPGLGSLEFLRNNAQFQALRSMVQSNPQILQPVLQELGKQNPNLLRLIQEHHAEFLQLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIARLEAMGFDRASVIEAFLACDRDEQLAANYLLENAGDFED 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32g00020 373 Gene3D - 143 193 - -
Stsc32g00020 373 FunFam UV excision repair protein RAD23 B 238 304 - -
Stsc32g00020 373 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Stsc32g00020 373 NCBIfam UV excision repair protein Rad23 1 372 IPR004806 GO:0006289
Stsc32g00020 373 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 148 191 IPR015940 -
Stsc32g00020 373 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 362 - -
Stsc32g00020 373 SMART uba_6 150 190 IPR015940 -
Stsc32g00020 373 SMART uba_6 329 366 IPR015940 -
Stsc32g00020 373 SUPERFAMILY UBA-like 308 370 IPR009060 GO:0005515
Stsc32g00020 373 CDD Ubl_Rad23 1 74 - -
Stsc32g00020 373 Pfam UBA/TS-N domain 150 188 IPR015940 -
Stsc32g00020 373 Pfam UBA/TS-N domain 329 364 IPR015940 -
Stsc32g00020 373 SUPERFAMILY XPC-binding domain 245 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc32g00020 373 FunFam UV excision repair protein RAD23 homolog 143 193 - -
Stsc32g00020 373 Gene3D - 320 368 - -
Stsc32g00020 373 SUPERFAMILY Ubiquitin-like 1 86 IPR029071 -
Stsc32g00020 373 FunFam UV excision repair protein RAD23 1 80 - -
Stsc32g00020 373 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Stsc32g00020 373 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 327 367 IPR015940 -
Stsc32g00020 373 PRINTS DNA repair protein Rad23 signature 274 296 IPR004806 GO:0006289
Stsc32g00020 373 PRINTS DNA repair protein Rad23 signature 340 354 IPR004806 GO:0006289
Stsc32g00020 373 PRINTS DNA repair protein Rad23 signature 355 370 IPR004806 GO:0006289
Stsc32g00020 373 PRINTS DNA repair protein Rad23 signature 323 339 IPR004806 GO:0006289
Stsc32g00020 373 Gene3D - 1 80 - -
Stsc32g00020 373 SMART CBM 246 289 IPR006636 -
Stsc32g00020 373 FunFam UV excision repair protein RAD23 homolog 320 368 - -
Stsc32g00020 373 SUPERFAMILY UBA-like 146 198 IPR009060 GO:0005515
Stsc32g00020 373 MobiDBLite consensus disorder prediction 81 130 - -
Stsc32g00020 373 CDD UBA1_Rad23_plant 144 193 - -
Stsc32g00020 373 Pfam XPC-binding domain 248 303 IPR015360 GO:0003684|GO:0006289|GO:0043161
Stsc32g00020 373 Gene3D - 238 304 IPR036353 GO:0003684|GO:0006289|GO:0043161
Stsc32g00020 373 SMART ubq_7 1 75 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32g00020 Stsc-Chr32 63123 67870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32g00020 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.541 2.37e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32g00020 K10839 - gmx:100819019 622.854