Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32999g00001 ATGTCTTCTTCTCATCAGTGGCGTGGTAAGGCTATCATCCCTGTCCATTTCTCTGCTATTATACTCAACAAAACTCATCTTCACACTCTGAAAATATCAAGTAAATTTACAAGGAGATATGGAGGTGGTTTCTCCAATCCAATGTTTCTGAAGCCTCCAGATGGCAGCATATGGAAAGTGTATTGGACTAGAAAAAATCATGGTGGTGATGAGGTTTACTGGTTCCGAAAGGGTTGGAACAAGTTTACTGAAAAGTACTCCTTAGATCATGGGAACTTGCTGGTTTTCACCTACCATGGAACTTTCCAGCTTGATGTACACATCTTTGACAAAAGTGCCTCTGAAATACTCTATCCTTTATGTAAGGCTAACAACACCACTACTACTGGTTCTGATGAAAAGAAGATTAAGCTTGAACTGATCCATGATGATGATGATGATGAATCGATTCAAGTTTTGAAGGAAAACCCTCCACCCCAGAAGCCTAATAAACACAAACGCAGCATGCTAGTGTTGGCTCCTCAACCTTGTAAAAAAAGAATGGGAGATGAGAAGAAGGTGGTTATTAGGGAAAGAAGAAGTGGTGCATCATTGAATTGGCCAAAGGAAGAAAGAGCACAAGAAGTAGCTATGAACTTCGTGTCTCATAATCCTTTCTTCACTCTCTTCATAACACATGTCCATCTAGCAGAATACAAAGTGGTTGTGCCAAGCTTGAAAGGGTATGTTGATGAGGAAGAGAAGAATGTGGAGCTGAAAATTGGGGAAAAATCATGGGAAGTGAAGTTGAGGGCTTGTGATAAAAATAGCAACTCTAAAAGTCGCTGCTTCAGTGCTGGTTGGTCCATGTTTGCATATGAGAGTAAATTGCTACCAGGAGATGTTTGTGTTTTTGAACTCATCAACATGCACCCTGATCATCATGTAGAGTTTAAG 936 0.4028 MSSSHQWRGKAIIPVHFSAIILNKTHLHTLKISSKFTRRYGGGFSNPMFLKPPDGSIWKVYWTRKNHGGDEVYWFRKGWNKFTEKYSLDHGNLLVFTYHGTFQLDVHIFDKSASEILYPLCKANNTTTTGSDEKKIKLELIHDDDDDESIQVLKENPPPQKPNKHKRSMLVLAPQPCKKRMGDEKKVVIRERRSGASLNWPKEERAQEVAMNFVSHNPFFTLFITHVHLAEYKVVVPSLKGYVDEEEKNVELKIGEKSWEVKLRACDKNSNSKSRCFSAGWSMFAYESKLLPGDVCVFELINMHPDHHVEFK 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32999g00001 312 Pfam B3 DNA binding domain 25 111 IPR003340 GO:0003677
Stsc32999g00001 312 Pfam B3 DNA binding domain 242 302 IPR003340 GO:0003677
Stsc32999g00001 312 Gene3D - 14 114 IPR015300 -
Stsc32999g00001 312 CDD B3_DNA 218 311 IPR003340 GO:0003677
Stsc32999g00001 312 PANTHER B3 DOMAIN-CONTAINING 15 303 - -
Stsc32999g00001 312 SUPERFAMILY DNA-binding pseudobarrel domain 18 112 IPR015300 -
Stsc32999g00001 312 ProSiteProfiles B3 DNA-binding domain profile. 15 112 IPR003340 GO:0003677
Stsc32999g00001 312 CDD B3_DNA 16 110 IPR003340 GO:0003677
Stsc32999g00001 312 ProSiteProfiles B3 DNA-binding domain profile. 219 312 IPR003340 GO:0003677
Stsc32999g00001 312 SUPERFAMILY DNA-binding pseudobarrel domain 215 302 IPR015300 -
Stsc32999g00001 312 Gene3D - 199 312 IPR015300 -
Stsc32999g00001 312 SMART B3_2 219 308 IPR003340 GO:0003677
Stsc32999g00001 312 SMART B3_2 17 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32999g00001 Stsc-Chr32999 115 1329 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32999g00001 17 301 B3 DNA Binding Superfamily AT3G18990 26.888 4.55e-22 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc32999g00001 B3 3.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32999g00001 - - adu:107467240 446.432