Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc328g00011 ATGGACGTTGACATGATTTCAATGATGACGATGATGCACATGGAAAAGTTGCCTGAATTCTCCGAATCCCTTTACACCTCAACTCCCACCACCACCACCACCGCCACCACTTACCAAGAAAACAACGAGTTCTCCGGTGCCCAAACCACCACCACCATTCCCACCATATTCAACGCACCACCAGCACCGCCGTGTTTGATTGATCCACCGCCGTTCGACATTGTCAACTTCCCCATCCAACAACAACCGGTTTCATTCAAGAACCGTCACCATTGTTCATCACCATCATCATCAAGGGAGATGAAAAGTTCTTCGATGGCAGCAATGAGAGAAATGATATTCCGAATAGCGGTGATGCAGCCGGTCCACATCGACCCGGAAGCCGTAAAGGCGCCGAAGCGGAGGAACGTAAAGATTTCAAAGGATCCTCAGAGCGTGGCGGCGCGCCACCGGCGGGAAAGGATAAGCGAGAGGATAAGGATCTTGCAGAGATTGGTGCCAGGTGGAACCAAAATGGACACTGCTTCTATGTTGGATGAGGCAGTGCACTATGTGAAGTTCTTGAAGAAGCAGGTGCAGACTCTGGAACAAGCAGAAGCAGGTAGAATAACAAGATCCCTTCGTGGTGGGTTTTCTTCTTCTAATAACAATGGCAATAATGTGAATTACGATTCTTTTTTTAGTAAGGGTAGTAGTAGTAGTAGTTGCCAACAACCTTGTCATAATTTTGTGGGTTCTACTTCTTCTTCCAA 752 0.4761 MDVDMISMMTMMHMEKLPEFSESLYTSTPTTTTTATTYQENNEFSGAQTTTTIPTIFNAPPAPPCLIDPPPFDIVNFPIQQQPVSFKNRHHCSSPSSSREMKSSSMAAMREMIFRIAVMQPVHIDPEAVKAPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAVHYVKFLKKQVQTLEQAEAGRITRSLRGGFSSSNNNGNNVNYDSFFSKGSSSSSCQQPCHNFVGSTSSS 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc328g00011 250 SMART finulus 145 194 IPR011598 GO:0046983
Stsc328g00011 250 FunFam BHLH transcription factor 142 206 - -
Stsc328g00011 250 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 139 188 IPR011598 GO:0046983
Stsc328g00011 250 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 40 237 IPR045843 GO:0003700|GO:0006355
Stsc328g00011 250 Pfam Helix-loop-helix DNA-binding domain 149 188 IPR011598 GO:0046983
Stsc328g00011 250 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 143 197 IPR036638 GO:0046983
Stsc328g00011 250 MobiDBLite consensus disorder prediction 231 250 - -
Stsc328g00011 250 Gene3D - 138 207 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc328g00011 Stsc-Chr328 52993 53869 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc328g00011 4 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 52.294 2.32e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc328g00011 HLH 1.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc328g00011 - - gmx:100796649 214.157