Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc327g00001 ATGCAGTTACAGTTGCTTGAGGAATTGTTTGGAAAAGGAATTAAGAACCCATCCGCTCTACAAATCCAGCACATAACTTCTCAGCTGCGACGCTATGGCAAGATCGAGGGCAAGAATGTCTTCTACTGGTTTCAGAATCACAAGGCCAGGGAGCGCAAGAAGCATCGCCTCCGTCACATGGAGGAAACTGCTTCTTCATCACAAGCACAAGGGTGGTTGAAAGAAAAAGGTTGTGAAGCCAAAGAAACAAAGATGTGGGCATCCACTTCAAAATGCAATGGTGGTGGACATGATTTTCAGGAATATGAAAAGCAGGGTAAATGCCAATATATGGATCACTTGATGAACATTTCCTCCATTAACATAGCAGCAACAAATTCCGTGGTAGCTTCGCAGAAGATAAGTCAAAACATTCACCTTCTAAGCACTCCTCAACATCACAACTTCAACGAAAATTTCAGTAACTATCATGGAGCTCAAGAGAATAATAATGATTACAATAATAATAATAATGCAGATTCTCGAACCCTCGAGCTTTTTCCAATTCACAAGAACAATGATGATGAAGAAAATAATAATGGCATCATCACTTCTTTCTCGGAGTGGAAATCCAACAAGTTCTGTGCTAATTCTTCGTCCACGGAAGAAATCATCAGTTGCCACCAGTTCTTTTGA 675 0.4059 MQLQLLEELFGKGIKNPSALQIQHITSQLRRYGKIEGKNVFYWFQNHKARERKKHRLRHMEETASSSQAQGWLKEKGCEAKETKMWASTSKCNGGGHDFQEYEKQGKCQYMDHLMNISSINIAATNSVVASQKISQNIHLLSTPQHHNFNENFSNYHGAQENNNDYNNNNNADSRTLELFPIHKNNDDEENNNGIITSFSEWKSNKFCANSSSTEEIISCHQFF 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc327g00001 224 CDD homeodomain 2 55 IPR001356 GO:0003677
Stsc327g00001 224 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 2 206 IPR044555 GO:0003700|GO:0099402
Stsc327g00001 224 Pfam Homeodomain 2 53 IPR001356 GO:0003677
Stsc327g00001 224 Gene3D - 1 60 - -
Stsc327g00001 224 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Stsc327g00001 224 ProSiteProfiles 'Homeobox' domain profile. 1 54 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc327g00001 Stsc-Chr327 3733 6034 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc327g00001 2 93 Wox Gene Family AT3G18010 51.961 1.89e-24 97.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Stsc327g00001 Homeodomain 1.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc327g00001 - - gmx:102666678 162.155