Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32764g00001 ATGGAAGAAGATAGAGACTGTTGCTCCACCAATAATTCCAACACCACGACCACGACGAAAAGCAGAAGCAGAAGAAGCAGCAGCAGCAGCAGCTCTTTAGAGAAACGCAAACAGCAGCAACAAGAAGAGAAGCCGTACAGAGGAATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCGGAGATTAGAGAACCGAACAAGAGGTCAAGGATATGGCTGGGTTCATACACAACACCGATAGCCGCCGCACGCGCCTACGACACCGCCGTGTTCTACCTGAGAGGCCCATCCGCGCGGCTCAACTTCCCTGACTTGTTGTTCCAAGAGCAAAACGGCGAAGGCGTGGAGGAAGGAGACATAACCGCCGATTCCATACGCAGAAGAGCCACACAGGTTGGTGCGAGAGTGGACGCTGCTCTTCAGGCTTCATCAAACTCCCCTAATTCCAGCCATCAAAACACTGCTGAAAAGCCAGACTTGAACGAGTTTCCAAAACCCGAAGAAACTGAAGACGATTCTCTTGATCATGACCTTCAAGATTAA 540 0.5111 MEEDRDCCSTNNSNTTTTTKSRSRRSSSSSSSLEKRKQQQQEEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYTTPIAAARAYDTAVFYLRGPSARLNFPDLLFQEQNGEGVEEGDITADSIRRRATQVGARVDAALQASSNSPNSSHQNTAEKPDLNEFPKPEETEDDSLDHDLQD 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32764g00001 179 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Stsc32764g00001 179 MobiDBLite consensus disorder prediction 136 156 - -
Stsc32764g00001 179 MobiDBLite consensus disorder prediction 1 47 - -
Stsc32764g00001 179 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Stsc32764g00001 179 MobiDBLite consensus disorder prediction 136 179 - -
Stsc32764g00001 179 PRINTS Ethylene responsive element binding protein signature 84 104 IPR001471 GO:0003700|GO:0006355
Stsc32764g00001 179 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Stsc32764g00001 179 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Stsc32764g00001 179 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Stsc32764g00001 179 MobiDBLite consensus disorder prediction 157 179 - -
Stsc32764g00001 179 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 22 169 - -
Stsc32764g00001 179 MobiDBLite consensus disorder prediction 8 35 - -
Stsc32764g00001 179 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Stsc32764g00001 179 Pfam AP2 domain 46 94 IPR001471 GO:0003700|GO:0006355
Stsc32764g00001 179 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32764g00001 Stsc-Chr32764 4963 5502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32764g00001 31 150 AP2-EREBP Transcription Factor Family AT1G46768 64.341 2.14e-52 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc32764g00001 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32764g00001 K09286 - gmx:100801528 202.986