Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc326g00004 ATGGAGGAGTTGATAATCTCTCCCTCATCATCATCTTCGCTGGTGTCTATCCCACAAGAAAACACTCCAACCCTACTTCAAGAAAAGCTTCATTTCCTACTCCAAAACCAGTTACCAGAATGGTGGCTCTATGCCATCTTCTGGCACACCACCAACGACGACAATGGCAACCTCTTCCTCTCCTGGGGAGACGGCCATTTCCAAGGCGCCAAAGACGCCTCCTCCCCGAGACTTCTCCCTCACTACCCCATTTCCGCTCCAGACAGATCCAGAAAGTTCACCACCAACAACAACAACACTAATAACGACGGAGAATGGTTCTACGTGATGTCTTTGACTCGCACCTTCTCTATCGGCGAAGCTTCATATTCTTCGCTACCGGGGAAGGCCTTCGCTTTGGGGTCTCCCATCTGGCTGCTGAAAGGCGACCTTCAGTTCAGCGACTGTGAGAGAGCTAAAGAAGCTTACATGCATGGCATCCAAACTCTCATACACATTCCAACCACCGATGGTGTTCTCGAAATGGGTTCCTACGATCTCATCACCCAAAACTGGTCTCTCCTTCAACAAACCAAGTCCCTCTTTGGATCTCAATCGGATCTCATTCCCAATAACAAGCAACTCAATCCGCCCATACAGTTCTTCGACGACCAGAACATCTCCTTCGCTGACATTGGCATTATCGCCGGCGTTCAAGAAGAAGACAACTCACACCAAGAAGATCCCGCCGCCGCCGCCCGAAAGAGAAAGGAAAGGGAAGAACTCAACATCAACAAGAAGAATAAGGATCACATATCAATGGGGAAGTTTGGGTCGTCGCGTCAATCGTCCTTCGTGGATTCGGAGCATTCCGACTCGGACTGTGGTGCACCAATGGGTGCGGCAGAGAAGAGGTTGCCTAAGAAGAGAGGGAGAAAACCAGGGCTAGGGCGTGAAACCCCGCTGAATCACGTGGAGGCAGAGCGGCAGCGAAGGGAGAAACTTAACCATCGATTCTACGCTTTGAGAGCGGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCTTTGCTTTCGGACGCGGTTTCTTACATCAATGAACTGAAAGCAAAGATCGAAGAGTTGGAGACGCAGGTGCAGAAGGAATCTTCCAGCAACAACAATAACAACAATAAGAAGGTGAAGGTTGAAACGGGCGACAGTATGGACAACCAGAGCACCACCACGTCCTCCGTGGACCAAAGCAACAACAATGAGAATGAGGCGGTGGAGGTAGAGGTTGAGGTAGAGGTGAAGATGATAGGAGGGGAGGCGGCGATGGTGAGGGTTCAGTCGGAGAGTGGGAGGCACCCCGGTGCGAGGCTGATGAATGCATTGCGGGAATTGGAGTTTCAAGTGCAGAATGGAAGCATGTGGTGCGTCAATGAGAATAGCATGATGCTCCAACATGTTCTTGTGAAGGTTCCAGAATCAGTGATGAGAACTGAAGAAGCTATTAAGTCTGCCATTCTAAGCAGATTATTGGATCATCATCATCATCATTCTCATAATCTTGAGTAA 1539 0.4971 MEELIISPSSSSSLVSIPQENTPTLLQEKLHFLLQNQLPEWWLYAIFWHTTNDDNGNLFLSWGDGHFQGAKDASSPRLLPHYPISAPDRSRKFTTNNNNTNNDGEWFYVMSLTRTFSIGEASYSSLPGKAFALGSPIWLLKGDLQFSDCERAKEAYMHGIQTLIHIPTTDGVLEMGSYDLITQNWSLLQQTKSLFGSQSDLIPNNKQLNPPIQFFDDQNISFADIGIIAGVQEEDNSHQEDPAAAARKRKEREELNINKKNKDHISMGKFGSSRQSSFVDSEHSDSDCGAPMGAAEKRLPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYINELKAKIEELETQVQKESSSNNNNNNKKVKVETGDSMDNQSTTTSSVDQSNNNENEAVEVEVEVEVKMIGGEAAMVRVQSESGRHPGARLMNALRELEFQVQNGSMWCVNENSMMLQHVLVKVPESVMRTEEAIKSAILSRLLDHHHHHSHNLE 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc326g00004 512 SMART finulus 318 367 IPR011598 GO:0046983
Stsc326g00004 512 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 312 361 IPR011598 GO:0046983
Stsc326g00004 512 MobiDBLite consensus disorder prediction 268 283 - -
Stsc326g00004 512 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 312 374 IPR036638 GO:0046983
Stsc326g00004 512 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 26 195 IPR025610 -
Stsc326g00004 512 PANTHER MYC 18 499 IPR045084 GO:0003700|GO:0006355
Stsc326g00004 512 Gene3D - 310 379 IPR036638 GO:0046983
Stsc326g00004 512 Coils Coil 243 263 - -
Stsc326g00004 512 CDD bHLH_AtAIB_like 310 374 - -
Stsc326g00004 512 MobiDBLite consensus disorder prediction 306 323 - -
Stsc326g00004 512 MobiDBLite consensus disorder prediction 372 415 - -
Stsc326g00004 512 Pfam Helix-loop-helix DNA-binding domain 316 361 IPR011598 GO:0046983
Stsc326g00004 512 MobiDBLite consensus disorder prediction 232 323 - -
Stsc326g00004 512 Coils Coil 351 385 - -
Stsc326g00004 512 MobiDBLite consensus disorder prediction 234 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc326g00004 Stsc-Chr326 11425 12963 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc326g00004 26 500 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G17880 33.333 1.41e-76 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc326g00004 bHLH-MYC_N 7.3e-42 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc326g00004 - K13422 adu:107491832 781.941