Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32683g00001 ATGTACTCTGAAAATCTGATACTCTCCGCCGAAAACCCTAGACCCTTCGCGTTTCACCTACCTCTATCTTCTTCTTCTTCTTCTACTACTTCTACTACTTTGGCCAACGTGAAACCCATGAGCAATGAGATCGCTCAGAAGCCTCCCCCTTCCATTCTCGTTGGCAGGTTCAAAACTCTGCTCAAGCAGCGCGACGACGAGCTCAGGGCCACCCTACTCGGTGGCGCTGGTCACGTGCCGCCTCCGTCAACGGAAGAAATCGTTCAGTTGTACGAGATGATGCTGTCGGAGCTCACGTGCAATCTGAAGCCTATCATCACCGATCTTACCATCATCGCTGAGCAGCAGAGGGAGCACGCCAGGGGAATCGCCGACGCTATTTGCGCTCGGATTCTCGAGGTGCCTGCAGAGCAGAAGCTTCCTTCACTCTATCTCTTGGACAGTATAGTGAAGAATTTTGGACAGGAATATGTTAGATACTTTGCATTACGTCTTCCTGAAGTTTTCTGTGAGGCATACAGGCAGGTTCAGCCTCATTTGCACCCTGCTATGCGCCATCTCTTTGGCACCTGGTCAAAAGTCTTTCCACCTTCTGTCCTACGCAAGATTGAAGCTGAGTTGCAACTTTCTCAAGTTGTTAATAATAGTCAATCGTCCACAATGAATCCCCTCAGAGCATCTGAATCTCCTAGACCAAGTCATGGCATACATGTAAACCCAAAGTACTTGCGGCAGTTGGATCGCTCAACTGTGGATAGTGTAAGCTTTTTGACGACGTCTCTGTCTTCCATACAAAAAATATCCAGAGGCTAG 813 0.4871 MYSENLILSAENPRPFAFHLPLSSSSSSTTSTTLANVKPMSNEIAQKPPPSILVGRFKTLLKQRDDELRATLLGGAGHVPPPSTEEIVQLYEMMLSELTCNLKPIITDLTIIAEQQREHARGIADAICARILEVPAEQKLPSLYLLDSIVKNFGQEYVRYFALRLPEVFCEAYRQVQPHLHPAMRHLFGTWSKVFPPSVLRKIEAELQLSQVVNNSQSSTMNPLRASESPRPSHGIHVNPKYLRQLDRSTVDSVSFLTTSLSSIQKISRG 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32683g00001 270 SMART 558neu5 86 208 IPR006569 -
Stsc32683g00001 270 FunFam polyadenylation and cleavage factor homolog 4 80 208 - -
Stsc32683g00001 270 Pfam CID domain 101 202 IPR006569 -
Stsc32683g00001 270 SUPERFAMILY ENTH/VHS domain 82 207 IPR008942 -
Stsc32683g00001 270 CDD CID_Pcf11 88 208 IPR047415 -
Stsc32683g00001 270 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 81 250 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Stsc32683g00001 270 Gene3D - 81 209 IPR008942 -
Stsc32683g00001 270 MobiDBLite consensus disorder prediction 216 238 - -
Stsc32683g00001 270 ProSiteProfiles CID domain profile. 83 211 IPR006569 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32683g00001 Stsc-Chr32683 1204 3199 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32683g00001 38 253 C2H2 Transcription Factor Family AT4G04885 64.055 1.76e-83 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32683g00001 K14400 - gmx:100787354 370.548