Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32511g00001 ATGTCCCGTGTTTATGTTGGTAATCTGGATTCAAGGGTCACAGAGAGGGACCTTGAAGATGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCAAGGAGACCTCCTGGTTATGCTTTTATTGACTTTGATGACAGTAGAGATGCACGTGATGCAATTCGTGAATTGGATGGCAAGAATGGTTGGAGGGTAGAGCTTTCTCACAATTCAAGAGGTGGAGGCGGTGGCCGTGGAGGTGGTCGTGGTCGCTCTGGTGGTTCCGATTTGAAATGCTATGAGTGCGGTGAACCTGGTCATTTTGCTCGTGAGTGTCGCTTGCGTGGTGGTTCAGGAAGACGTCGTAGCCGCAGCCCCCCTCGGTTTCGTAGGAGCCCTAGTTATGGTCGGAGAAGTTACAGTCCGCGTGGACGGTCCCCTAGACGACGCAGTTTATCACCTCGTGGACGGAGCTATAGCAGGTCACCTCCTTACCGTGGACGTGAGGAGCTACCATATGCCAATGGAAATGGCATTAGGGAACGTCGCCGAAGCAGAAGTTGA 546 0.5183 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDSRDARDAIRELDGKNGWRVELSHNSRGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREELPYANGNGIRERRRSRS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32511g00001 181 ProSiteProfiles Zinc finger CCHC-type profile. 92 107 IPR001878 GO:0003676|GO:0008270
Stsc32511g00001 181 SUPERFAMILY Retrovirus zinc finger-like domains 85 108 IPR036875 GO:0003676|GO:0008270
Stsc32511g00001 181 CDD RRM_SRSF3_like 3 71 - -
Stsc32511g00001 181 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 161 - -
Stsc32511g00001 181 Pfam Zinc knuckle 92 107 IPR001878 GO:0003676|GO:0008270
Stsc32511g00001 181 SMART rrm1_1 3 69 IPR000504 GO:0003723
Stsc32511g00001 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Stsc32511g00001 181 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Stsc32511g00001 181 FunFam Serine/arginine-rich splicing factor RSZ22A 89 149 - -
Stsc32511g00001 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Stsc32511g00001 181 SMART c2hcfinal6 92 108 IPR001878 GO:0003676|GO:0008270
Stsc32511g00001 181 SUPERFAMILY RNA-binding domain, RBD 3 87 IPR035979 GO:0003676
Stsc32511g00001 181 Gene3D - 87 145 - -
Stsc32511g00001 181 MobiDBLite consensus disorder prediction 105 181 - -
Stsc32511g00001 181 Gene3D - 1 73 IPR012677 -
Stsc32511g00001 181 MobiDBLite consensus disorder prediction 66 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32511g00001 Stsc-Chr32511 577 2868 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32511g00001 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 39.683 2.22e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32511g00001 K12896 - cit:102606969 235.728