Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32503g00001 ATGGTTGACCATTTCATTCTTTGCATTGATCCTGTCATGCCCTCTTCTTTACCATCACCCCCACCCCCTCCTCCTCCTCATGATCACATTCATTATGTTCCACAACAACACTGCTCCCATGATGCTGCTGCTCTGCTTGTGGAATGTAGAATATGTCAGGAAGAAGATCACGTCCATGCCATGGAGTCCCCTTGTTCCTGTAATGGCACTCTCAAGTTTGCTCATAGGAAGTGCGTCCAAAAATGGTGCAACAGGAAAGGAAATACAATATGTGAAATCTGCAATCAGGTATTTTCACCAAACTATTCTCTTCCAATAGTCAGAAGCAATGACATTATAGCAATTGATCTAAGGCAAGAATGGGAGCATAATACAGATCTCCGTGTTGCTCTAACTTCGGCCGAGAACCAGTTGCTGCAAAGTGAATACGAAGAATATGCTATCACACAAACCAGTAGCATTGCTTGCGTCCGCTCTGCCACTCTCATCTTGCTGATAGTTTTGCTTGTGCGCCAAGCCTTAATGATTACAACGAGCTCTGCAACTCGGAGCGATTCATCAAGAATATTTGATTTTGAGATGTCACTCCTTCAATTTGCCGGCATTCTTTTGCCGTGTTGCGCAATGGCACGTTCCTGGTATCTCATGCATAACAGAAGAAGACAGGGTTAA 672 0.442 MVDHFILCIDPVMPSSLPSPPPPPPPHDHIHYVPQQHCSHDAAALLVECRICQEEDHVHAMESPCSCNGTLKFAHRKCVQKWCNRKGNTICEICNQVFSPNYSLPIVRSNDIIAIDLRQEWEHNTDLRVALTSAENQLLQSEYEEYAITQTSSIACVRSATLILLIVLLVRQALMITTSSATRSDSSRIFDFEMSLLQFAGILLPCCAMARSWYLMHNRRRQG 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32503g00001 223 Pfam Protein of unknown function (DUF3675) 100 213 IPR022143 -
Stsc32503g00001 223 Pfam RING-variant domain 49 94 IPR011016 GO:0008270
Stsc32503g00001 223 SMART ringv_2 48 95 IPR011016 GO:0008270
Stsc32503g00001 223 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 222 IPR033275 -
Stsc32503g00001 223 SUPERFAMILY RING/U-box 48 98 - -
Stsc32503g00001 223 CDD RING_CH-C4HC3_MARCH 49 95 - -
Stsc32503g00001 223 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 100 IPR013083 -
Stsc32503g00001 223 ProSiteProfiles Zinc finger RING-CH-type profile. 41 101 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32503g00001 Stsc-Chr32503 4244 7589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32503g00001 48 144 C3H Transcription Factor Family AT2G37950 26.000 2.16e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32503g00001 - - lang:109333136 286.189