Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3243g00001 ATGCAGGGAGATATTAATATCCACCAATTCTTTACTGGGTATTCAACCGGACGTCAAGATTGGTGTAACTGGCCTCAGATACTTAAATTGAAAGATTGGCCGCCTTCCAATTTATTTGAGGAACGTTTACCACGTCACTGTGCTGAGTTTTTATCATCCTTGCCCTACAAGGACTATACAGATCCTCTAGCTGGTGCTCTTAATCTTGCTGTAAAGTTGCCTGAAGATTGTATAAAGCCAGACATGGGACCAAAAACGTATATTGCTTATGGATTTCCTGAAGAGCTTGGGCGTGGTGATTCTGTGACTAAGCTCCACTGCGATATGTCTGATGCAGTAAATGTGCTAACTCACATTTCTGAAGTGAAATTGGATTCTAACGTACGTGAAGCGATTAAGAAATACAAAGCAAAGCACCTAGAGCAGGACCGGAGGGAGTTGTATGGAGCTCATGAGGAAGAAACTACTGATGACATGCATAATGGTTTTCAAGTTGCGGAACATGAAACTGGATTATGTGACATGAAAGTGGATGAGCAGTTTCATCAGCCTTCTGGTAATAATGAGAGTACAGCTGTAAATATGGATGGTCTTTCTTGTGGGTCAGAGCTGAAAGAGGCTGAAAAAGTTGAAATAGAAAAAGAAAAAAGTACGTCGGACGCGTCAGATGCCAAAGATGGTGCTCTCTGGGATATTTTTCGAAGACAAGATATTCCTAAATTGCAGGAGTATCTGAAAAATCATTTTAGAGAGTTTAGACATATACATGGCAATCCTTTGAAGCAGGTTACTCACCCCATCCATGATCAAACCATCTCTTTATTTCTTGTAGGAATTGAGCCCTGGACTTTTGTTCAGAGGTTAGGAGAAGCTGTTTTCATTCCAGCAGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGCATCAAGGTTGCCCTTGATTTTGTATCACCTGAAAATCTTGGTGAGTGCTTCCGTTTGACGGAGGAATTCCGCACACTCCCAATAAATCACAGGTCTTCTGAGGACAAGTTGGAGGTGAAGAAAATGACAGTATACTCAATGGAAGATGTGATTAAAAATTTGGAGGAAGCACGGTCTGGGAAAAGAGAGGTTCAGGATGTAGATACAACTGAAAGAGAATGA 1146 0.4136 MQGDINIHQFFTGYSTGRQDWCNWPQILKLKDWPPSNLFEERLPRHCAEFLSSLPYKDYTDPLAGALNLAVKLPEDCIKPDMGPKTYIAYGFPEELGRGDSVTKLHCDMSDAVNVLTHISEVKLDSNVREAIKKYKAKHLEQDRRELYGAHEEETTDDMHNGFQVAEHETGLCDMKVDEQFHQPSGNNESTAVNMDGLSCGSELKEAEKVEIEKEKSTSDASDAKDGALWDIFRRQDIPKLQEYLKNHFREFRHIHGNPLKQVTHPIHDQTISLFLVGIEPWTFVQRLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENLGECFRLTEEFRTLPINHRSSEDKLEVKKMTVYSMEDVIKNLEEARSGKREVQDVDTTERE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3243g00001 381 SMART cupin_9 43 332 IPR003347 -
Stsc3243g00001 381 Gene3D Cupin 1 341 - -
Stsc3243g00001 381 Pfam JmjC domain, hydroxylase 210 315 IPR003347 -
Stsc3243g00001 381 SUPERFAMILY Clavaminate synthase-like 25 351 - -
Stsc3243g00001 381 ProSiteProfiles JmjC domain profile. 62 332 IPR003347 -
Stsc3243g00001 381 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 367 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3243g00001 Stsc-Chr3243 238 3439 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Stsc3243g00001 JmjC 4.2e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3243g00001 K15601 - gmx:100805723 552.362