Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32396g00001 ATTTTTCATTTTAAAAAAGGAGTTTTTATGTCACGTTACAGAGGACCTCGTTTCAAAAAAATACGTCGTCTAGGATATTTACCAGGACTTACTAGTAAAAGGCCAACAGTCAAAAACGAATTTCGAAATCAATTGCGCTTCAGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTGCTTAAATACGTTCGTATCTCCGGAAAAGCTAAAGGATCAACTGGTCAGGTTTTATTACAACTACTTGAAATGCGCTTGGATAACATACTTTTTCGATTGGGTATGGCTGCGACTATTCCTCAAGCCCGCCAATTTATAAACCATAGACATGTTTTAGTTAATGGTCGTATAGTGGATATACCAAGTTATCGTTGTAAACCTCAAGATATTATTACAGCAAAGGATGAACAAAAATCTAAAACTCTTATTCAAAATTATTTTGATTCAGCCCCCCATGAGAAATTGCCAAATCATTTGACTGTTCACCCTTTCCAATATAAAGGTTTAATTAATCAAATAATAGATAATAAATGGGTTGGTTTGAAAATAAATGAATTACTGGTTGTAGAATATTATTCTCGTCAAACTTAA 633 0.3239 IFHFKKGVFMSRYRGPRFKKIRRLGYLPGLTSKRPTVKNEFRNQLRFSKKSQYRIRLEEKQKLRFHYGLTERQLLKYVRISGKAKGSTGQVLLQLLEMRLDNILFRLGMAATIPQARQFINHRHVLVNGRIVDIPSYRCKPQDIITAKDEQKSKTLIQNYFDSAPHEKLPNHLTVHPFQYKGLINQIIDNKWVGLKINELLVVEYYSRQT 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32396g00001 210 ProSitePatterns Ribosomal protein S4 signature. 96 120 IPR018079 GO:0019843
Stsc32396g00001 210 FunFam 30S ribosomal protein S4, chloroplastic 97 193 - -
Stsc32396g00001 210 Pfam S4 domain 98 145 IPR002942 GO:0003723
Stsc32396g00001 210 ProSiteProfiles S4 RNA-binding domain profile. 98 160 - -
Stsc32396g00001 210 SUPERFAMILY Alpha-L RNA-binding motif 12 208 - -
Stsc32396g00001 210 CDD S4 98 157 - -
Stsc32396g00001 210 SMART Ribosomal_S4_2 12 97 IPR001912 GO:0019843
Stsc32396g00001 210 FunFam 30S ribosomal protein S4, chloroplastic 12 107 - -
Stsc32396g00001 210 Gene3D - 97 193 IPR036986 GO:0003723
Stsc32396g00001 210 Gene3D Ribosomal Protein S4 Delta 41; Chain A, domain 1 12 208 - -
Stsc32396g00001 210 NCBIfam 30S ribosomal protein S4 12 208 IPR005709 GO:0003735|GO:0006412|GO:0015935
Stsc32396g00001 210 Hamap 30S ribosomal protein S4 [rpsD]. 10 208 IPR005709 GO:0003735|GO:0006412|GO:0015935
Stsc32396g00001 210 PANTHER 30S 40S RIBOSOMAL PROTEIN 18 181 IPR022801 GO:0003735|GO:0015935|GO:0019843
Stsc32396g00001 210 Pfam Ribosomal protein S4/S9 N-terminal domain 12 97 IPR001912 GO:0019843
Stsc32396g00001 210 SMART s4_6 98 161 IPR002942 GO:0003723
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32396g00001 95 137 Cytoplasmic Ribosomal Protein Gene Family AT5G39850 46.512 9.81e-06 42.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32396g00001 K02986 - gmx:3989263 380.563