Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32379g00001 ATGCGCGGCCTATGCGTACTGGATGCATACGCATCAGGTGCCTTTTCACTTACCTTGTTCCCGCACACTGGATGCGTGCGCAAGGGGTTGTCTGATGCTGTTGATTACAAAGGGAATGATTTCAAGGCCACAGTGTTCGAGTTCATGTCTAATGGGAGTCTAGAAACCTTGTTGCACAACAACATTGAAGATAGCGAGTCCACAAATCCAAGTCTCAACCTTATTCAAAGGGTAAATATTGCTCTTGACGTAGCGTTCGCATTGGATTATCTTCACAATGATTCATCGGAAGGTGTAGTTCATTGTGATATTAAACCAAGCAATGTTCTACTTGATGATGACATGGTTGCCCACTTGGGAGACTTTGGATTAGCTAGACTCATTCATGATGCCACAAGCCATTCTAACAAGCATGGAGCAGGCGGCTCAGTGTCAATAGAGAGAGACATGTATAACTATGGAATTCTTCTTCTGGAGATGATCACTGGAAAGAAACCAACTGATAGTATGTTTGGTGAATATCTAGCCTACACATGTTCTGTAACATGGCAATTCCAGAAAGAGTCAATGAGATTGTTGATTCAAGATTGCTCATTCAATTCCATGGCCAATTGA 615 0.426 MRGLCVLDAYASGAFSLTLFPHTGCVRKGLSDAVDYKGNDFKATVFEFMSNGSLETLLHNNIEDSESTNPSLNLIQRVNIALDVAFALDYLHNDSSEGVVHCDIKPSNVLLDDDMVAHLGDFGLARLIHDATSHSNKHGAGGSVSIERDMYNYGILLLEMITGKKPTDSMFGEYLAYTCSVTWQFQKESMRLLIQDCSFNSMAN 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32379g00001 204 Pfam Protein kinase domain 43 168 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32379g00001 204 ProSitePatterns Serine/Threonine protein kinases active-site signature. 99 111 IPR008271 GO:0004672|GO:0006468
Stsc32379g00001 204 SUPERFAMILY Protein kinase-like (PK-like) 39 174 IPR011009 -
Stsc32379g00001 204 FunFam Os07g0541700 protein 49 143 - -
Stsc32379g00001 204 ProSiteProfiles Protein kinase domain profile. 1 204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32379g00001 204 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 40 194 - -
Stsc32379g00001 204 Gene3D Transferase(Phosphotransferase) domain 1 32 200 - -
Stsc32379g00001 204 SMART serkin_6 4 203 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32379g00001 Stsc-Chr32379 4506 5538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32379g00001 33 172 Receptor kinase-like Gene Family AT3G47570 47.799 7.28e-43 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc32379g00001 Pkinase 7.8e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32379g00001 - - ahf:112766919 225.328