Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32348g00002 ATGGCGAACACGAAGAACGTGCTTCGGTTCTTCATCATCTTCCAATATGTTCCCAGGCTATATTTGATTTTCCCACTCTCTTCACAAATTGTAAGTGCTACTGGGGTTGTCACAGAAACAGCATGGGCTGGTGCTGCTTACAACCTCATGCTTTACATGTTGGCAAGCCATATTTTAGGAGCTTGCTGGTACCTTCTATCAATAGAAAGGCAAGAAGCATGTTGGAGGAATGCATGCAATGTTGAGAAGCCATTTTGTGAATATGGATTCTTTGACTGCCACAGGATTGGAAATCCCCAAAGAGACTTATGGTTTCTAGCAAGTAACATCACAAACCTATGCTCACCAGATTCTAACTTGTATCAGTTTGGTATATATGCTGATGCTGTCACTTCTCAAGTTACATCCTCAACATTCTTCAATAAGTACTTCTTTTGTCTTTGGTGGGGCCTTAGGAATCTCAGCTCATTGGGACAAGGCCTTCTTACTAGCACTTTTGTTGGAGAAATCATGGTTGCCATTGTTGTTGCAACACTTGGATTGGTTCTTTTTGCATTGCTCATTGGTAATATGCAGACATACCTTCAATCAACAACAGTGAGGTTAGAAGAATGGAGGGTGAAAAGAACAGACACAGAACAATGGATGCATCACAGGCAATTACCACAAGAGCTTAGACAATCTGTCCGCAGATATGATCAATACAAATGGATGGCTACTAGGGGAGTTGATGAAGAAGCTCTCCTCAAAGGTCTTCCATTAGATCTTCGTCGAGACATCAAGCGCCACCTTTGTCTGGACCTTGTTCGAGGAGTACCATTGTTTGATCAAATGGATGAGAGCATGCTAGATGCAATATGTGAGAGATTAAAACCAGCATTATGCACTGAAGGAACATACCTTGTAAGAGAAGGTGATCCAGTGAATGAAATGTTGTTCATAATAAGAGGTCACCTTGATTCATACACAACCAATGGTGGCAGAGCTGGATTCTTCAACTCATGCCGTATTGGGCCTGGTGATTTCTGTGGAGAGGAGCTTCTGACTTGGGCCTTGGACCCAAGGCCCAGTGTGATTCTCCCTTCTTCAACAAGAACAGTTAAGGCCTTCTCAGAAGTTGAGGCATTTGCACTCATTGCTGAAGATCTTAAATTCGTTGCATCCCAGTTTAGGAGGCTGCATAGCAAGCAACTTAGGCACAAGTTTAGATTCTATTCACACCAATGGAGAACTTGGGCCGCATGTTTCATTCAAGCTGCTTGGAGAAGGCATAAGAAGAGAAAGAATCTTGATAAACTAAGAGCAAAGGAGAATAATACTAATAATAATAATGATGATTATGTAACAGTTTCTGAGCCTGAGACTCCAACATTAAGGAGTGTGGTGAGGAGTGGTAGGAAAAGTGTTAGTAGGACAGATTCTGGTGTAGTTAGCTCTGTGCAGAAGCCAGCTGAGCCTGACTTTTCGGTTGAAGAATGA 1479 0.4233 MANTKNVLRFFIIFQYVPRLYLIFPLSSQIVSATGVVTETAWAGAAYNLMLYMLASHILGACWYLLSIERQEACWRNACNVEKPFCEYGFFDCHRIGNPQRDLWFLASNITNLCSPDSNLYQFGIYADAVTSQVTSSTFFNKYFFCLWWGLRNLSSLGQGLLTSTFVGEIMVAIVVATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDTEQWMHHRQLPQELRQSVRRYDQYKWMATRGVDEEALLKGLPLDLRRDIKRHLCLDLVRGVPLFDQMDESMLDAICERLKPALCTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAFSEVEAFALIAEDLKFVASQFRRLHSKQLRHKFRFYSHQWRTWAACFIQAAWRRHKKRKNLDKLRAKENNTNNNNDDYVTVSEPETPTLRSVVRSGRKSVSRTDSGVVSSVQKPAEPDFSVEE 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32348g00002 492 Gene3D - 2 198 - -
Stsc32348g00002 492 MobiDBLite consensus disorder prediction 440 479 - -
Stsc32348g00002 492 SUPERFAMILY cAMP-binding domain-like 204 400 IPR018490 -
Stsc32348g00002 492 Gene3D Helix hairpin bin 201 265 - -
Stsc32348g00002 492 Pfam Ion transport protein 13 201 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Stsc32348g00002 492 Coils Coil 423 443 - -
Stsc32348g00002 492 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 3 488 - -
Stsc32348g00002 492 Gene3D Jelly Rolls 272 392 IPR014710 -
Stsc32348g00002 492 FunFam Cyclic nucleotide-gated ion channel 1 201 265 - -
Stsc32348g00002 492 ProSiteProfiles IQ motif profile. 410 439 IPR000048 GO:0005515
Stsc32348g00002 492 CDD CAP_ED 274 405 IPR000595 -
Stsc32348g00002 492 ProSiteProfiles cAMP/cGMP binding motif profile. 274 359 IPR000595 -
Stsc32348g00002 492 FunFam Cyclic nucleotide-gated ion channel 1 272 390 - -
Stsc32348g00002 492 SMART cnmp_10 274 405 IPR000595 -
Stsc32348g00002 492 MobiDBLite consensus disorder prediction 434 492 - -
Stsc32348g00002 492 SUPERFAMILY Voltage-gated potassium channels 18 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32348g00002 Stsc-Chr32348 2582 4491 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32348g00002 1 491 Ion Channels AT2G28260 78.208 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32348g00002 K05391 - gmx:100811847 857.055