Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32308g00003 ATGATTACCAATTCATTTCGTGAGAAACTAGGACAAGGAGGTTTTGGTACTGTGTATAAGGGAACTTTGAGTGATGGTTGTCAAGTAGCTGTGAAGATTTTGAAGGAATCCGAAGGTAATGGAGAAGATTTCATAAATGAGGTTGCAAGTATTAATAGAACATCCCACGTGAATATCGTCCCATGTTTAGGATTTTGTTATGAGACAAATAAAAGAGCTTTGATTTATGAATTCATGGCAAATGGTTCTTTAGATAAATTTGTCGATGAAAAAGCATCATTTAGTTCTGTGTGTAAATTGGATTGGAGTAGACTCTACCAAATTACAATTGGCATTGCTCGAGGACTAGAGTATTTACATGGGGGATGTGGCACCAAGATTTTACATCTTGATATTAAACCTCAAAATATTCTTTTGGATGAAAATTTTGTTCCTAAAATTGCTGATTTTGGATTAGTTAAACTTTGCACGAAGAATGAGAGCATTGTATCTCTACAATGTGCAAGAGGAACTCCAGGATATATTGCACCAGAAGTATATAATCAAATACGTTTGGGAGTATCTCGAGTTTCTCATAAATCTGGTGTATATAGTTACGGGAGATTGATTCTTGCAGTAGTCGGAGAAAAAAAAAATTATAATAGTAGAGACTCCCATACCAGTGAAATATCCTTTACGGATTGGATTTATAAGGAATTGGAGCAAGATAATCTTCCAGCAAGCTGCTTGACGAACACAGATGATGAAAATGATTTGGTGAAGAAGATCATTTTGGTAAGCATGTGGTGTATACAAAAAGTTCCCTTAGACAGACCATCCATGAAAAGAGTGATAGAGATGTTAGAAGGACCACTTGAATCTATCCCATTTCCTCCAAAACCGCCACTGTGGCATTCTCCCCAAGGATCAAACTTGCAGTCTCCAGATGACAATACACTTGAGGCAGATTCATTAACTTCAGTGGAGAATGATCCCATCAATCCAAATGGGTTTGCCTAA 999 0.3674 MITNSFREKLGQGGFGTVYKGTLSDGCQVAVKILKESEGNGEDFINEVASINRTSHVNIVPCLGFCYETNKRALIYEFMANGSLDKFVDEKASFSSVCKLDWSRLYQITIGIARGLEYLHGGCGTKILHLDIKPQNILLDENFVPKIADFGLVKLCTKNESIVSLQCARGTPGYIAPEVYNQIRLGVSRVSHKSGVYSYGRLILAVVGEKKNYNSRDSHTSEISFTDWIYKELEQDNLPASCLTNTDDENDLVKKIILVSMWCIQKVPLDRPSMKRVIEMLEGPLESIPFPPKPPLWHSPQGSNLQSPDDNTLEADSLTSVENDPINPNGFA 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32308g00003 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Stsc32308g00003 332 Gene3D Transferase(Phosphotransferase) domain 1 79 288 - -
Stsc32308g00003 332 SMART serkin_6 4 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32308g00003 332 Gene3D Phosphorylase Kinase; domain 1 1 78 - -
Stsc32308g00003 332 ProSiteProfiles Protein kinase domain profile. 4 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32308g00003 332 MobiDBLite consensus disorder prediction 299 326 - -
Stsc32308g00003 332 FunFam PR5-like receptor kinase 79 291 - -
Stsc32308g00003 332 PANTHER RUST RESISTANCE KINASE LR10-RELATED 2 303 IPR045874 GO:0004672
Stsc32308g00003 332 MobiDBLite consensus disorder prediction 291 332 - -
Stsc32308g00003 332 Pfam Protein kinase domain 7 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32308g00003 332 ProSitePatterns Protein kinases ATP-binding region signature. 10 32 IPR017441 GO:0005524
Stsc32308g00003 332 SUPERFAMILY Protein kinase-like (PK-like) 5 281 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32308g00003 Stsc-Chr32308 7288 8286 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32308g00003 2 303 Receptor kinase-like Gene Family AT1G66910 56.721 2.95e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc32308g00003 Pkinase 5.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32308g00003 - - aip:107637474 434.876