Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32308g00001 ATGGCTCAAATTGGTTTTACTACTTTTCCTACACTCTTCTTCTTTTTTTTCTTCTTGTTCATCTTGTGTGTCCACTCCGACGACGTTAGTAGCCTTCGAGATCCAGAAGGTTACTACTTGAACGAGCTTCTGAAAAGCCTCAACCCACCTCCCTCCAACTGGTCCCACAGCAACAACTACCTCACCGACCATGTTTGTAATTGGCGTGGCGTTGAGTGCAATAACGAGGGCCATGTCTACGCTCTTGACATCTCTTCAATGTCCCTCACCGGCACAATCCCTTCCGATCTCAACAACTACCTCACCAACCTCAACCAACTTCTTCTATACAACAACTCTCTCTCGGGGCCTCTTCCCTCTCTCGCCGGCCTCTCCATGCTCAGAGAGGTTTACCTCAACGACAACAATTTCACCTCCGTCCCTGATCATTGCTTTCAGGGTCTTTCCAGTTTGGAAATCCTCTCACTAAGTAACAACAACAACCTCTCACCCTGGAATTTCCCTCTTGATTTGGCTCACTCATCATCCAAACTCGAACGCCTCGAATTGGAGGGAACAAATCTTATGGGAACCTTACCACCTGAAATATGCACTTCCTCCCCCAACTTGACCTCTCTTGACCTCTATAACAACAAGCTCACTGGTCCCCTGCCTGATTTTTCCAATTGCACCAACTTGGGTTGGCTGGATCTTCAAGATAACTTGCTAACTGGTATAGTTCCACCTTCCTTGATGAATTTCTCCAGTTCTCCTTCAGTGGATTTGGAAAACAACTATCTTCAGGGTCCATTGCCAGTGTTTAAACAACACATTACTGCCAACACCAGCAATAATAGGTTCTGTTTAGACCATGCTGGGCCTTGTGACAATCGAGTCACCACTTTGCTTCAAATTGCTGAGGCCTTTGGTTATCCNNNNNNNNNNCCTGGAAACAATCCATGTCAAAACTGGAGTTTCGTTGTGTGCATCCAGAACAAGATCACAACCCTCAATTTCACCAAACTAAATCTGACGGGTACAATCTCTCCTGCATTTAGAAACTTAACTGATTTGAGGGAATTGTATCTAAGTGCAAATCATTTGAGTGGTCCAATTCCAGAGAGCTTAACAGGTTTACCTCAACTGAAGGTTCTTGATGTCTCAAATAACAATCTATCAGGCAACATACCCAATTTCTCATCTAATGTCACTCTCATTACTAAGGGTAATGTTCTGCTCCGCAACGGTTCTCATCATCAACCAAGCACAATAACTCCATCTAAAGCTTCATTACCACTTTCCTTAATTGCAGGCTTATCAGCAGCAATTGTTGGAATCTTTTTAACATGTGTTGTGGTCATATACAAAAGCAAGAGGTTAAGGAAAATCTTGTTCAAGAGAACAACCGTTGATCGCAATGTTGAGGATTTGATACAAAGTCATGGGTTTATAGTGCAGAAACGATATAGTTACTCACAGATAAAAAAGATGACCAATTCATTTTGTGAGAAACTAGGACAAGGAGGTTTTGGTACTGTATATAAAGGAACTTTGAGTGATGGTCGTCAAGTAGCTGTGAAGATATTGAAAGAATCCCAAGGTAATGGAGAAGATTTCATAAATGAGGTTGCAAGCATTAACAGAACATCTCATGTGAATATTGTTCCATTTTTAGGATTTTGTTATGAGACAGATAAAAGAGCTTTGATTTATCAATTCATGTCAAATGGGTCTTTAGATAAATTTGTTGATGAAAAAGCATCATTTAATGCTGTGTGTAAATTGGATTGGAGTAGACTCTACCAAATTACAATTGGCATTGCTCGAGGATTAGAGTATTTACATGGGGGATGTAGTACCAAGATTTTACATCTTGATATTAAACCTCAAAATATTCTTTTGGATGAAAATTTTGTTCCTAAAATTGCTGATTTTGGATTAGCTAAACTTTGCACTAAGAATGAGAGCATTGTATCTCTACAATGTGCGAGAGGAACTCCAGGATATATTGCACCAGAAGTATATAATCAAATACGTTCGGGAGTATCTCGAGTTTCTCATAAATCTGATGTGTATAGTTACGGGAGGTTGATTCTTGCAGTAGTCGGAGGAAAGAAGAATTATAATAATAGAGACTCCCGCAGCAGTGAAATATACTTTACAGATTGGATTTATAAGGAATTGGAGCAAAATAATCTTCCAGCAAGCTGCTTGTCGAACACAGATGATGAAAATGATTTGGTGAAGAAGATCATTTTGGTAAGCATGTGGTGCATACAAAAAATTCCGTCAGACAGACCATCCATGAAAAAAGTAATAGAGATGCTAGAAGGACCACTTGAATCTATCTCATTTCCTCCAAAACCACCACTGTGGCATTCTCCCCAAGGATCAAACATGCAGTCTCCAGATGACAATACACTTGAGGCAGATTCATTAACTTCAGTGGAGAATGATTCCATCAATCCAAATGAGTTTGCCTAA 2463 0.4015 MAQIGFTTFPTLFFFFFFLFILCVHSDDVSSLRDPEGYYLNELLKSLNPPPSNWSHSNNYLTDHVCNWRGVECNNEGHVYALDISSMSLTGTIPSDLNNYLTNLNQLLLYNNSLSGPLPSLAGLSMLREVYLNDNNFTSVPDHCFQGLSSLEILSLSNNNNLSPWNFPLDLAHSSSKLERLELEGTNLMGTLPPEICTSSPNLTSLDLYNNKLTGPLPDFSNCTNLGWLDLQDNLLTGIVPPSLMNFSSSPSVDLENNYLQGPLPVFKQHITANTSNNRFCLDHAGPCDNRVTTLLQIAEAFGYPXXXPGNNPCQNWSFVVCIQNKITTLNFTKLNLTGTISPAFRNLTDLRELYLSANHLSGPIPESLTGLPQLKVLDVSNNNLSGNIPNFSSNVTLITKGNVLLRNGSHHQPSTITPSKASLPLSLIAGLSAAIVGIFLTCVVVIYKSKRLRKILFKRTTVDRNVEDLIQSHGFIVQKRYSYSQIKKMTNSFCEKLGQGGFGTVYKGTLSDGRQVAVKILKESQGNGEDFINEVASINRTSHVNIVPFLGFCYETDKRALIYQFMSNGSLDKFVDEKASFNAVCKLDWSRLYQITIGIARGLEYLHGGCSTKILHLDIKPQNILLDENFVPKIADFGLAKLCTKNESIVSLQCARGTPGYIAPEVYNQIRSGVSRVSHKSDVYSYGRLILAVVGGKKNYNNRDSRSSEIYFTDWIYKELEQNNLPASCLSNTDDENDLVKKIILVSMWCIQKIPSDRPSMKKVIEMLEGPLESISFPPKPPLWHSPQGSNMQSPDDNTLEADSLTSVENDSINPNEFA 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32308g00001 820 Gene3D Phosphorylase Kinase; domain 1 467 566 - -
Stsc32308g00001 820 SUPERFAMILY L domain-like 53 398 - -
Stsc32308g00001 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 615 627 IPR008271 GO:0004672|GO:0006468
Stsc32308g00001 820 Pfam Protein kinase domain 496 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32308g00001 820 MobiDBLite consensus disorder prediction 777 820 - -
Stsc32308g00001 820 FunFam Suppressor of npr1-1 constitutive 4 464 566 - -
Stsc32308g00001 820 ProSiteProfiles Leucine-rich repeat profile. 374 396 IPR001611 GO:0005515
Stsc32308g00001 820 FunFam PR5-like receptor kinase 567 780 - -
Stsc32308g00001 820 SMART LRR_typ_2 372 396 IPR003591 -
Stsc32308g00001 820 SMART LRR_typ_2 124 147 IPR003591 -
Stsc32308g00001 820 SMART LRR_typ_2 348 371 IPR003591 -
Stsc32308g00001 820 Gene3D Ribonuclease Inhibitor 34 281 IPR032675 -
Stsc32308g00001 820 Pfam Leucine rich repeat N-terminal domain 35 74 IPR013210 -
Stsc32308g00001 820 Pfam Leucine rich repeat N-terminal domain 309 322 IPR013210 -
Stsc32308g00001 820 PANTHER OSJNBA0070M12.3 PROTEIN 200 774 - -
Stsc32308g00001 820 SMART serkin_6 492 769 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32308g00001 820 FunFam Leucine-rich repeat receptor-like kinase 290 409 - -
Stsc32308g00001 820 ProSiteProfiles Leucine-rich repeat profile. 202 224 IPR001611 GO:0005515
Stsc32308g00001 820 Pfam Leucine rich repeat 127 188 IPR001611 GO:0005515
Stsc32308g00001 820 Pfam Leucine rich repeat 328 385 IPR001611 GO:0005515
Stsc32308g00001 820 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Stsc32308g00001 820 Gene3D Ribonuclease Inhibitor 290 409 IPR032675 -
Stsc32308g00001 820 MobiDBLite consensus disorder prediction 787 820 - -
Stsc32308g00001 820 SUPERFAMILY Protein kinase-like (PK-like) 471 769 IPR011009 -
Stsc32308g00001 820 Gene3D Transferase(Phosphotransferase) domain 1 567 777 - -
Stsc32308g00001 820 ProSiteProfiles Protein kinase domain profile. 492 773 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32308g00001 Stsc-Chr32308 1223 4572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32308g00001 418 819 Receptor kinase-like Gene Family AT5G38280 52.463 6.36e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc32308g00001 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32308g00001 - K00924 aip:107635702 662.529