Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32299g00001 ATGGATTCAGCGAGGAGTTGGTTTCAGAAGTTTCAGCCTCGTGATAAAACAAAAGGGTTTGGAAAGAAGAAGGAGGAAGATAACAACAACGGAGGAGGAGCAGAAGTTTTGAGTGTAGCTGTTGATGAAGCTTCTCTTTCCAATGACACAAAGCAGAAGGTTGCTGCTGCAAAGCAGTATATTGAAAACCATTACAAGGAGCAAATGAAGAATCTTCAGGAGAGGAAGGATCGTCGGACCTTTTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAGGAGGATCAGAACAACCTACTTAAATTTTTGGAGAAAAAGGAAACTGAATATATGCGCCTTCAGAGGCATAAGATGGGAGTTGATGATTTTGAATTGCTGACTATGATTGGCAAAGGTGCATTTGGTGAGGTCAGAGTTTGTAGGGAAAAGACTACGGGTCAGGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGGTTGAACATGTTAGAGCTGAAAGGAATCTCCTTGCTGAGGTTGACAGCAATTGCATAGTCAAACTGTATTGTTCTTTTCAGGATGATGAGTATCTATATCTTATTATGGAGTATCTTCCTGGTGGGGATATGATGACACTGCTTATGAGAAAGGATACCTTGACGGAAGATGAGGCCAGATTTTATGTAGCAGAAACAATTCTGGCTATTGAATCCATACATAAACACAATTATATACATAGGTACATAGATATCATTCATTGTTCATTTGCTTTCAAAAGTTTCTTGTTTCCTTAA 789 0.3954 MDSARSWFQKFQPRDKTKGFGKKKEEDNNNGGGAEVLSVAVDEASLSNDTKQKVAAAKQYIENHYKEQMKNLQERKDRRTFLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTGQVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVAETILAIESIHKHNYIHRYIDIIHCSFAFKSFLFP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32299g00001 262 Pfam Protein kinase domain 124 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32299g00001 262 SUPERFAMILY Protein kinase-like (PK-like) 104 246 IPR011009 -
Stsc32299g00001 262 MobiDBLite consensus disorder prediction 1 34 - -
Stsc32299g00001 262 SMART serkin_6 123 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32299g00001 262 ProSiteProfiles Protein kinase domain profile. 123 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32299g00001 262 ProSitePatterns Protein kinases ATP-binding region signature. 129 152 IPR017441 GO:0005524
Stsc32299g00001 262 Gene3D Phosphorylase Kinase; domain 1 58 255 - -
Stsc32299g00001 262 FunFam Non-specific serine/threonine protein kinase 94 206 - -
Stsc32299g00001 262 PANTHER SERINE/THREONINE-PROTEIN KINASE 43 245 - -
Stsc32299g00001 262 Coils Coil 65 85 - -
Stsc32299g00001 262 MobiDBLite consensus disorder prediction 9 30 - -
Stsc32299g00001 262 CDD MobB_NDR_LATS-like 57 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32299g00001 Stsc-Chr32299 286 3603 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32299g00001 1 247 AGC Kinase Gene Family AT1G03920 76.628 3.10e-138 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Stsc32299g00001 Pkinase 5.8e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32299g00001 K08790 - gmx:100779528 434.876