Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32270g00001 ATGAAAACTCATCATTGGAGCTCCTTCTTTTTCATCTTATCATTAGAATTTTGGTCCCTCCTCCTCTTCTTCTTCTTCCCCTCAGCAAAAGCCCTCAACGCATTTCAATTATTATCTCATAATGCTTCAACAAAATCTAACTCAAGAAGAATCCTGCATCAGCCGCTGTTTCCGGCAGCATCAGCTCCGGCGGCATTACCACCGCCTCCAGCAACACCGGACACTCCTTCCTCTCCAGACATTCCTTTCTTCAATGAGAATCCACCAGGTCCGCCGCCGGCAGACCTGAACCAGCAGCCAGCAGCGGCGGCCACTGCCAACGGCCGAATTGCGAACCCGACAGCAACGCAGCCGGCGAAGCCGATTAAGACAGTGGCGATTGTGGTCTCGGTCGCGTTCGTGACGTTTGGAATGCTGTTTGTGTTGGCGTTCTTCTTGTACAAACAAACAGCGAAGCAGCAGCTACCGGAGACGACGCAGAAGCTGGTAGCCGCCGAGTCACGAAACGAGTTGCCAACGGAGGCGCCACCTTCTAGTCTATACTACATTGGCACGGTGGATCCGAGCAGAGTGTCGGTGAGTGAAACGAGCGAAGAAGCCACTGCCAGTGAAATGAACCGTTCGTCTTCGTCATATCGAAAACTCAATTCGAAGAAGGTTTCCGAAAGGTACCGTCCCAGCCCCGAGCTTCAGCCATTGCCGCCGCTAAGCAAAACAGTTGCCGACGGCAGCCATCCACCACCGGCTGCCTCCTCGTCATCTTCATCCGATGACGAGGAGAATAGCCGTGAAACGGCGTTTCACTCGCCACAGGCGTCGTCATCTCTCAGCCTCGAGGACGGTTACCACACGCCAGTTTCCCGAAATAGTTATTTCTCCAACGGTAGTAGCAGTTCTGCGGCGGCACCGCCGCCAGTTCCTTTCTCGAAGAGAAATTCTCCGAAGTCTCGGAATTCAGCTTCGTCGGATACCAAAGTCACCATGATAATACCCCCGATAAAACATACTCCGCCGCGGTCACCATCACCACCACAGCAAGAATCTATCTCCGGTCCCTCCAGACGGCCGAGATTCGCGGCTCCTCCTCCGGCACCAAATTTAACTCTTATTCATTCAAATATGTCCACAAATTCCATCAATCCTCCACCACCTCCGCCACCGCCGCCACCACCTCCTCCGCAGCGGAAGGTTCGCACTCCAGCAATACATTTGACCTCCTCCTCCTCATCGTCGTCCTCCTCTGCCTCAAGAATGCAGCAGGAGTCTTGGTCTCGGAGCCAAGTTGCAGCGTCTGCAGCAAAGAGCATTGCAAAGGCTTCGGAGGAATTTAACAAGATGAAGAGAGTGGCATCATCTGAGAAGGTAGTAGAAGGTGATGACGTGGAAGGAGGGAGACCAAAGCTGAAGGCTCTGCATTGGGATAAAGTGCGTGCTACATCTGAACGTGCCACTGTGTGGGACCAGTTAAAGTCAAGCTCGTTTCAATTAAATGAGGACATGATGGAGTCTCTGTTTGGGTGTGGTGGCGCGAGTTCTGCACCTAAAGAGACGGTTACAAGGAAATCAGTTATTCCAACAGTTGAACATGAGAACAGGGTGTTAGACCCCAAGAAGTCCCAAAACATTGCTATAATGCTCAGGGCACTCAATGTTACTAGAGATGAGGTCTCCGAAGCTCTCTTGGACGGTAACTTCCACTTTGAGGTAATGCTCAAAATGATCTTTGAAATTGCGAAAGCAAATTAA 1746 0.5155 MKTHHWSSFFFILSLEFWSLLLFFFFPSAKALNAFQLLSHNASTKSNSRRILHQPLFPAASAPAALPPPPATPDTPSSPDIPFFNENPPGPPPADLNQQPAAAATANGRIANPTATQPAKPIKTVAIVVSVAFVTFGMLFVLAFFLYKQTAKQQLPETTQKLVAAESRNELPTEAPPSSLYYIGTVDPSRVSVSETSEEATASEMNRSSSSYRKLNSKKVSERYRPSPELQPLPPLSKTVADGSHPPPAASSSSSSDDEENSRETAFHSPQASSSLSLEDGYHTPVSRNSYFSNGSSSSAAAPPPVPFSKRNSPKSRNSASSDTKVTMIIPPIKHTPPRSPSPPQQESISGPSRRPRFAAPPPAPNLTLIHSNMSTNSINPPPPPPPPPPPPPQRKVRTPAIHLTSSSSSSSSSASRMQQESWSRSQVAASAAKSIAKASEEFNKMKRVASSEKVVEGDDVEGGRPKLKALHWDKVRATSERATVWDQLKSSSFQLNEDMMESLFGCGGASSAPKETVTRKSVIPTVEHENRVLDPKKSQNIAIMLRALNVTRDEVSEALLDGNFHFEVMLKMIFEIAKAN 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 63 105 - -
Stsc32270g00001 581 ProSiteProfiles Formin homology-2 (FH2) domain profile. 458 581 IPR015425 -
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 193 426 - -
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 400 426 - -
Stsc32270g00001 581 SUPERFAMILY Formin homology 2 domain (FH2 domain) 383 566 - -
Stsc32270g00001 581 PANTHER FORMIN-RELATED 21 564 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Stsc32270g00001 581 Coils Coil 148 168 - -
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 266 303 - -
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 193 215 - -
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 311 326 - -
Stsc32270g00001 581 Gene3D Formin, FH2 domain 459 574 IPR042201 -
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 378 397 - -
Stsc32270g00001 581 Pfam Formin Homology 2 Domain 465 564 IPR015425 -
Stsc32270g00001 581 MobiDBLite consensus disorder prediction 63 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32270g00001 Stsc-Chr32270 5282 7136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32270g00001 438 564 FH2 protein (formin) Gene Family AT5G67470 72.441 1.46e-47 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32270g00001 - - gmx:100803578 371.703