Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32244g00001 ATGGATATTACCGACACGCCACGGAATAGTGACACAGACTCTGATCTATATCCACTGCTGATGGAGCAGTTGGTATCCCACGATGATCATCAGCACATAATTGATATTACAAGGAGCAATGATGCGTTATCCAACTCATCTAATAATCAACGCCCTGCAGTGCATGAAAATCGATCTAGTATCAGCACCGATGTCCCTACCCGTGAAACATCTTCGTTTTCTTCACCTAGATTTAGTCCTAGAAGTTCTACATCAACAAGAGGTGAGGGGTACAATCATCGCAGGAGGAGCCCACTAAATTCGGGTCTATGGATTTCTGTAGAACTTGTTGTCACTTTGGGTCAGATCATATCATCTGTTGCTGTCTTGTCACTATCAAGAGATGAACATCCCGAAGCCCCATTATTTGCATGGATTGTGGGTTATGCAGCTGGTTGTTTTGCTACACTTCCTATTCTTTACTGGCGATATCGAAACTATAACCAAAGTGCAGAACAAGATATATCCCAATCATCTCAAGGATCTTCTTTAAGCAACCCTTCAGATGCTACATATACTGCCATATCTGTTGCCCATAATTCAAACAACCACAACGGTCATACTATGGAATTTTCTGCGAGAAGTGCTAGAATTCCTGGAGCGTTTAGTGCTAGGTTTAATGGATTAGTAGACCATTTCAAGATGGCGTTGGATTGCTTCTTTGCAATTTGGTTTGTTGTAGGCAATGTTTGGATCTTTGGAGGTCACTCTTCTCCTTCCGATGCTCCAAAATTGTATAGGTTATGTATAGTCTTCCTTACCTTCAGCTGCATTGGATATGCCATGCCCTTTATACTGTGTGCAACAATTTGTTGCTGCCTACCTTGCATTATTTCTGTCTTTGGCATTCCTGAGGATTTTTCACCGAACAGAGGAGCCTCAATAGAATCCATTAACGCTCTGCCAATCTATAAGTTCAAATTGAAGAAAAATGATGATAGTGGTGTTGAGGATGTCAATACTGCTGCTGAAGATGATGATGGGGGAATTCTGGCCGCTGGGACAGAAAAGGAACGGCCTATATCAGGAGAAGATTCTGCTTGCTGCATTTGCTTGGCAAAATATGCAGACGATGATGAGATTCGGGAGCTACCGTGCTTTCATATCTTTCATGTAGATTGTGTTGATAAATGGTTAAAGATAAATGCATCCTGTCCTCTTTGTAAATATGAAGTTGGTGCAAACAATGAAGGTTCACCTTTGGCCATGGATTCCAATCAGAGCATCAGATGA 1272 0.4175 MDITDTPRNSDTDSDLYPLLMEQLVSHDDHQHIIDITRSNDALSNSSNNQRPAVHENRSSISTDVPTRETSSFSSPRFSPRSSTSTRGEGYNHRRRSPLNSGLWISVELVVTLGQIISSVAVLSLSRDEHPEAPLFAWIVGYAAGCFATLPILYWRYRNYNQSAEQDISQSSQGSSLSNPSDATYTAISVAHNSNNHNGHTMEFSARSARIPGAFSARFNGLVDHFKMALDCFFAIWFVVGNVWIFGGHSSPSDAPKLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVFGIPEDFSPNRGASIESINALPIYKFKLKKNDDSGVEDVNTAAEDDDGGILAAGTEKERPISGEDSACCICLAKYADDDEIRELPCFHIFHVDCVDKWLKINASCPLCKYEVGANNEGSPLAMDSNQSIR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32244g00001 423 Pfam Ring finger domain 360 402 IPR001841 -
Stsc32244g00001 423 ProSiteProfiles Zinc finger RING-type profile. 361 402 IPR001841 -
Stsc32244g00001 423 MobiDBLite consensus disorder prediction 38 87 - -
Stsc32244g00001 423 SUPERFAMILY RING/U-box 356 407 - -
Stsc32244g00001 423 SMART ring_2 361 401 IPR001841 -
Stsc32244g00001 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 344 410 IPR013083 -
Stsc32244g00001 423 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 21 405 - -
Stsc32244g00001 423 MobiDBLite consensus disorder prediction 38 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32244g00001 Stsc-Chr32244 1949 5228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32244g00001 1 412 C3H Transcription Factor Family AT1G80400 55.213 1.51e-165 469
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32244g00001 - - aip:107614650 655.595