Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc321g00007 ATGAGGTACATTCGAACCAGCAGCTTGAAGAGGCTTTTCTCCCTCAAAAGGCGCAGTTTTGGGGATCAATCAATGACCCGGACCGGTTCCGGTTCAACCGTTGGTGAAGATGAAGAACAGTGTTCTCCAAAACCCTCTTGGAAGTGCTTCTCCTATGAAGAGCTTTTTGATGCCACCAATGGTTTCAGCTCAGAGAATTTGGTTGGAAAAGGAGGGTATGCAGAGGTATACAAGGGAACATTGAAGGATGGAGAGAAGATTGCAGTGAAGAGGCTAACAAGAACTTGCAGAGATGAGAGGAAAGAGAAGGAGTTTCTAACAGAGATTGGGACAATCGGCCATGTCCACCATAACAATGTTTTGCCTCTTCTTGATGAAAAGATGGATGCTTTGGATTGGAGAACAAGGCATAAGATAGCTGTTGGAACTGCACGTGGCTTACATTACTTGCACAAAGGTTGCAAGAGAAGGATCATTCACAGGGACATTAAGGCATCAAATATTCTCTTGACAGAAGATTTTGAACCTCAGATATCTGATTTTGGATTAGCAAAATGGCTTCCATCTCAATGGAGTCATCATTCAATCGGGCCAATAGAAGGGACATTTGGGCATTTGGCACCAGAATACTATCTGCATGGAGTTGTGGATGAGAAGACAGATGTATTTGCATTTGGTGTGTTCTTGCTTGAACTCATTTCTGGTAGAAAACCAGTTGATGGCTCTCACCAAAGCTTGCATACTTGGGCTAAACCAATATTGAAGAAAGGGGAAGAAGAGAAGCTAGTGGATCCAAGGCTTGAAGGGAAGTATGATGGAGAAGAGTTAAAGAGACTTGCTTTTTCAGCATCCTTGTGCATTCGGGCATCTTCAGTTTGGCGACCAACCATGACTGAGGTATTAGAGGTAATGGAGGGTGGTGAAATTGACAAAGAGAAGTGGGAAATGCCAGAGGAAGAAGAAGAGGAAGATGAAGAAGAAGAGTTTTGGGGTTTTGATGATCTTGAATATGAATATGAGTATGACAGTTCATTATCAATGTCACTGCCTGACTCCACTGCAAGTACATATACTTAG 1077 0.429 MRYIRTSSLKRLFSLKRRSFGDQSMTRTGSGSTVGEDEEQCSPKPSWKCFSYEELFDATNGFSSENLVGKGGYAEVYKGTLKDGEKIAVKRLTRTCRDERKEKEFLTEIGTIGHVHHNNVLPLLDEKMDALDWRTRHKIAVGTARGLHYLHKGCKRRIIHRDIKASNILLTEDFEPQISDFGLAKWLPSQWSHHSIGPIEGTFGHLAPEYYLHGVVDEKTDVFAFGVFLLELISGRKPVDGSHQSLHTWAKPILKKGEEEKLVDPRLEGKYDGEELKRLAFSASLCIRASSVWRPTMTEVLEVMEGGEIDKEKWEMPEEEEEEDEEEEFWGFDDLEYEYEYDSSLSMSLPDSTASTYT 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc321g00007 358 ProSitePatterns Protein kinases ATP-binding region signature. 68 90 IPR017441 GO:0005524
Stsc321g00007 358 MobiDBLite consensus disorder prediction 314 329 - -
Stsc321g00007 358 SUPERFAMILY Protein kinase-like (PK-like) 40 304 IPR011009 -
Stsc321g00007 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Stsc321g00007 358 Coils Coil 89 109 - -
Stsc321g00007 358 SMART serkin_6 62 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc321g00007 358 ProSiteProfiles Protein kinase domain profile. 62 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc321g00007 358 MobiDBLite consensus disorder prediction 308 329 - -
Stsc321g00007 358 Gene3D Phosphorylase Kinase; domain 1 26 120 - -
Stsc321g00007 358 MobiDBLite consensus disorder prediction 23 39 - -
Stsc321g00007 358 Pfam Protein kinase domain 131 247 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc321g00007 358 PANTHER OS08G0249100 PROTEIN 125 336 IPR046958 -
Stsc321g00007 358 Pfam Protein tyrosine and serine/threonine kinase 65 124 IPR001245 GO:0004672|GO:0006468
Stsc321g00007 358 MobiDBLite consensus disorder prediction 23 42 - -
Stsc321g00007 358 Gene3D Transferase(Phosphotransferase) domain 1 121 330 - -
Stsc321g00007 358 FunFam Putative receptor-like serine/threonine-protein kinase 116 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc321g00007 Stsc-Chr321 42695 46375 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc321g00007 20 300 Trihelix Transcription Factor Family AT1G68690 41.905 1.21e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Stsc321g00007 Pkinase 2.4e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc321g00007 - - ahf:112697971 620.542