Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc321g00004 ATGGAGTGGGACAGCAACTCCGATCTGAGCGGGGAGGAGGAAGAGGAAGGAGCGTTCGACCTCACCGACGACGCCGCCGCCGATGATTGCCCTCTCCCGTTCCCCGTCGAGAACCTTCTTCTCCAGACCGCGCCCTGCGGATTCGTCGTTACGGATGCGCTCGAGCCGGACCACCCTATCATCTACGTCAACACCGTCTTCGAGATCGTCACCGGTTACCGCGCCGAGGAGGTTCTCGGTCGCAATTGTCGCTTCTTGCAATGTCGAGGTCCATTCGCCAAGAGAAGGCATCCATTGGTGGAATCAGCGGTAGTTTCAGAAATTAGAAGATGCCTTGAGGAAGGGATCGAATTCCAAGGTGAGTTGCTGAACTTTAGGAAAGATGGATCTCCACTGATGAACAGATTGCGGCTGACGCCTATATTTGGAGATGATGAGACTATAACACATGTAATTGGAATTCAGTTCTTCACAGAGGCAAACATTGATCTAGGTCCTGTTCATGGTTCGACACTCAAGGAATCTGCTAAGCCATCTGATCGATTTCGTTCTGTGCCTTCCTCTTTACATCCTCTTCCAGCAGGAGAGCGAAATGTATCTCGTGGAGTATGTGGGATATTCCAATTGAGTGATGAGGTACTGTCTCTGAAGATACTTGCTCGTTTAACTCCAAGAGATATTGCATCAGTTAGTTCTGTCTGTAGGAGATTGTATGAGCTGACAAAAAATGAAGACCTTTGGAGAATGGTGTGCCAAAATGCATGGGGCAGTGAGACTACACGTGTTTTAGAGACTGTGCCCGGTGCGAGGAGACTTGGATGGGGTCGGTTGGCAAGGGAATTGACCACTCTTGAAGCAGCAGCATGGAGGAAGTTGACTGTTGGAGGTGCTGTTGAACCCTCACGCTGTAATTTCAGTGCTTGTGCTGTGGGCAATAGAGTTGTCCTGTTTGGAGGTGAAGGGGTTAACATGCAACCTATGAATGACACCTTTGTATTGGATCTCAATTCTAGTAATCCTGAGTGGCAACACGTCCAGGTAAGCTCTCCTCCTCCTGGTCGATGGGGCCACACCATTTCTTGTGTTAATGGTTCTAATTTGGTCGTATTTGGAGGATGTGGGAGGCAGGGTTTGCTCAACGATGTGTTTGTTCTGGACCTGGATGCTAAGCCTCCAACTTGGCGTGAAATTTCCGGATTGGCACCTCCCCTTCCAAGGTCGTGGCATAGCTCCTGTACTCTAGATGGTACTAAGTTGATTGTTTCTGGGGGCTGTGCAGACTCTGGAGTGTTATTGAGTGACACTTTCCTCCNNNNNNNNNNCGTCTGGAGAGAGATACCAGTGGCATGGACTCCACCTTCTAGACTGGGCCACACATTGTCTGTTTACGGTGGTAGGAAAATACTGATGTTTGGGGGTCTGGCCAAGAGTGGACCCCTGCGTTTTCGTTCCAGTGATGTATTCACAATGGATCTAAGTGAGGAGGAACCTTGTTGGAGATGTGTAACGGGGAGTGGAATGCCCGGTGCTGGAAATCCAGGGGGCATAGCTCCTCCTCCTAGACTTGATCATGTGGCTGTCAGTCTTCCAGGTGGGAGAATTCTGATATTTGGTGGGTCTGTTGCTGGTCTTCATTCTGCTTCTCAGCTTTATATTCTTGATCCAACTGATGAGAAGCCCACGTGGAGGATTCTAAACGTACCCGGTCGCCCTCCGAGATTTGCTTGGGGACACAGCACATGTGTTGTTGGAGGGACAAGAGCTATTGTACTGGGTGGTCAAACCGGGGAGGAATGGATGCTAAGTGAGCTCCATGAACTTTCTCTTGCGAGTTCTGCCATATAG 1845 0.4965 MEWDSNSDLSGEEEEEGAFDLTDDAAADDCPLPFPVENLLLQTAPCGFVVTDALEPDHPIIYVNTVFEIVTGYRAEEVLGRNCRFLQCRGPFAKRRHPLVESAVVSEIRRCLEEGIEFQGELLNFRKDGSPLMNRLRLTPIFGDDETITHVIGIQFFTEANIDLGPVHGSTLKESAKPSDRFRSVPSSLHPLPAGERNVSRGVCGIFQLSDEVLSLKILARLTPRDIASVSSVCRRLYELTKNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGAVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSSNPEWQHVQVSSPPPGRWGHTISCVNGSNLVVFGGCGRQGLLNDVFVLDLDAKPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLXXXXVWREIPVAWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEEEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGEEWMLSELHELSLASSAI 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc321g00004 614 Pfam Galactose oxidase, central domain 302 352 - -
Stsc321g00004 614 ProSiteProfiles PAS repeat profile. 40 115 IPR000014 -
Stsc321g00004 614 FunFam Putative LOV domain-containing protein 279 479 - -
Stsc321g00004 614 Gene3D - 203 250 - -
Stsc321g00004 614 Gene3D - 451 612 IPR015915 GO:0005515
Stsc321g00004 614 FunFam Adagio protein 1 203 250 - -
Stsc321g00004 614 Pfam PAS domain 45 155 IPR000014 -
Stsc321g00004 614 NCBIfam PAS domain S-box protein 40 154 IPR000014 -
Stsc321g00004 614 ProSiteProfiles F-box domain profile. 217 250 IPR001810 GO:0005515
Stsc321g00004 614 Pfam F-box-like 214 252 IPR001810 GO:0005515
Stsc321g00004 614 Pfam Galactose oxidase, central domain 366 413 - -
Stsc321g00004 614 MobiDBLite consensus disorder prediction 1 23 - -
Stsc321g00004 614 SUPERFAMILY F-box domain 195 267 IPR036047 GO:0005515
Stsc321g00004 614 CDD PAS 44 154 IPR000014 -
Stsc321g00004 614 SUPERFAMILY Kelch motif 288 502 IPR015915 GO:0005515
Stsc321g00004 614 Pfam Kelch motif 522 569 IPR011498 GO:0005515
Stsc321g00004 614 Pfam Kelch motif 455 506 IPR011498 GO:0005515
Stsc321g00004 614 CDD F-box_AtADO-like 205 251 - -
Stsc321g00004 614 SUPERFAMILY PYP-like sensor domain (PAS domain) 44 155 IPR035965 -
Stsc321g00004 614 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 35 611 - -
Stsc321g00004 614 MobiDBLite consensus disorder prediction 1 26 - -
Stsc321g00004 614 Gene3D PAS domain 30 166 - -
Stsc321g00004 614 Gene3D - 280 447 IPR015915 GO:0005515
Stsc321g00004 614 SUPERFAMILY Galactose oxidase, central domain 449 596 IPR011043 -
Stsc321g00004 614 FunFam Adagio protein 1 34 166 - -
Stsc321g00004 614 FunFam Putative LOV domain-containing protein 480 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc321g00004 Stsc-Chr321 25849 29946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc321g00004 41 249 AGC Kinase Gene Family AT5G58140 25.322 1.44e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc321g00004 K12115 - gmx:100301887 1112.06