Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc321g00002 ATGGTTCGTGCTATAAAGGCTGCAATTGGTGATGGGGTGTTGACTTTCATGTGGGTCTTCTGTTCCTCCATGTTGGGGATTGCTTCAAGCTCCATAACAAGGTTTCTTGACATTCAGCACCTCCATTACAATGGCTTCCCTTACCCTTCATTCCTTGTCACAACTTTCCTTGTCTTCGTGCTTGTCTTTCTCTTCACCATCATTGGCAATGCCTTGGATGGTGCCAGCTTCAATCCCACCGGTACTGCTGCTTTCTATGCTGTTGGTCTCGGCTCTGACTCTCTCTTCTCCATGGCTCTGCGTTTTCCTGCCCAGGCCCTTGGTGCTGCTGGTGGAGCTTTGGCAATTATGGAGGTGATTCCTTCGAAATACAAGCACATGATGGGAGGCCCTTCATTGAAAGTGGATTTGCACACCGGTGCCGTTGTTGAGGGAGTGTTGACTTTTGTGATCACTTTTGCTGTGCTCTTCATAATCCTCAAGGGCCCTCATAGTGACTTGCTCAAGACTTGGTTGCTCGCCATGTCGACTGTTGCTCTAGTCATGGTTGGATCGGCTTACACCGGTCCATCCATGAATCCTGCCAACGCATTTGGTTGGGCATACCTAAACAACTGGCACAACACATGGGACCAATTCTATGTTTATTGGATCTGCCCCTTCGCCGGAGCAATATTTGCAGCGTGGTTTTTCCGCGCCATCTTCCCGCCGCCGGAAGCAGCCGCACAGAAGAAGAAACAGAAGAAAGCATGA 753 0.4967 MVRAIKAAIGDGVLTFMWVFCSSMLGIASSSITRFLDIQHLHYNGFPYPSFLVTTFLVFVLVFLFTIIGNALDGASFNPTGTAAFYAVGLGSDSLFSMALRFPAQALGAAGGALAIMEVIPSKYKHMMGGPSLKVDLHTGAVVEGVLTFVITFAVLFIILKGPHSDLLKTWLLAMSTVALVMVGSAYTGPSMNPANAFGWAYLNNWHNTWDQFYVYWICPFAGAIFAAWFFRAIFPPPEAAAQKKKQKKA 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc321g00002 250 PANTHER AQUAPORIN SIP1-1 4 246 IPR044222 GO:0015250
Stsc321g00002 250 SUPERFAMILY Aquaporin-like 4 241 IPR023271 -
Stsc321g00002 250 Gene3D Glycerol uptake facilitator protein. 2 249 IPR023271 -
Stsc321g00002 250 PRINTS Major intrinsic protein family signature 6 25 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc321g00002 250 PRINTS Major intrinsic protein family signature 174 196 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc321g00002 250 PRINTS Major intrinsic protein family signature 58 82 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc321g00002 250 PRINTS Major intrinsic protein family signature 97 116 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc321g00002 250 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc321g00002 250 PRINTS Major intrinsic protein family signature 143 161 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc321g00002 250 Pfam Major intrinsic protein 4 230 IPR000425 GO:0015267|GO:0016020|GO:0055085
Stsc321g00002 250 FunFam Aquaporin SIP1-1 2 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc321g00002 Stsc-Chr321 9076 13796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc321g00002 4 250 Major Intrinsic Protein MIP AT5G18290 54.032 6.78e-80 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc321g00002 K09875 - gmx:100792787 396.741