Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32167g00002 ATGAACAACCCTGGTTTATGCGGAATCGGATTCGCCAATTTAGCTCCTTGCAAAGCAGTAATCAGTAGTTCAGACCCGATCAGGCCAGAACCATATGAGCCTCGTAATCTTTCTACAGAAGTTCTTCCAACAACTGTTCAACCAAAAGATATAAAGCCATCAAAATCATCGAATATTGGTTTGGTTTTCGGGGTGATTGCAGTTACTTTCGCTTCAACTATCTTTGGCCTGTTTATAGTCTTATGGTACCGACATCAGAAATTGAAACTTGGGACCACTGCTAACACTACTGATACTCGGCTTAGTCTTAACAAGATCAGGGAACCGCGCAGGAAAATTGCATCTCCTCTGATAAGTTTAGAGTACTCCAATGGATGGGATCCTTTAGCCAAAGGTCAAAGTGGTTACTCCCAGGAGTTTCTAGAGAGCTTAATGTTCAATCTTGAAGACATCGAGCGCGCAACGCAGTGTTTCTCGGAGCTAAATCTGTTGGGGAAGAGTGATTTTTCAACTGTGTACAGGGGAATACTAAGAGATGGATCTGTTGTGGTAGTAAAGTGCATTGCCAAAACAAGCTGCAAGCCTGATGAAACTGAGTTCTTGAAAGGGTTGAAGATATTGGCCTCACTGAGGCATGAAAATCTGGTTCGGTTGAGAGGCTTTTGCTGTTCCAAGAGCCGTGGGGAATGCTTTCTGGTCTATGATTTTGTCTCGAATGCGAGTTTGTTACGGTACCTTGATGTTAAGAGAGATGATGATGATGATGCTATAGTTCTTGAGTGGTCCACAAGAGTATCCATCATCCATGGTATTGCTAAAGGTATTGCTTATCTGCATGGAAAGAAAGGAAGCAAAGGCAGTCTAGTTCACCAGAATTTATCAGCCCATACAGTTCTTCTTGATTCTCGCTACAATGCCGTTCTTGCATATTCGGGATTGCACAAACTACTCGCTGACGATGTTGTCTTCTCCACCCTTAAAGCTAGTGCAGCCATGGGATATCTGGCTCCGGAATACACGAAAACCGGTCGTCTAACTGAGAAGAGTGATGTGTATGCATTTGGGGTGATGGTTTTCCAGCTTCTTAGTGGTAAACGTGACATCACTCAGTTAAGTCGCCAGGGGGTGGAAACTGTCAGTTACAGAGATGTAGTAGATGAGAAACTTGAAGGGAAGTTCTCAGAATCAGAGGCTGCGAAACTGTGGGGTGTTGCTCTGCTTTGCACCCATAAATCTCCCCATCTCCGGCCATATATGGAAGATGTGATTCAAGAACTGTGTGATTAA 1287 0.4382 MNNPGLCGIGFANLAPCKAVISSSDPIRPEPYEPRNLSTEVLPTTVQPKDIKPSKSSNIGLVFGVIAVTFASTIFGLFIVLWYRHQKLKLGTTANTTDTRLSLNKIREPRRKIASPLISLEYSNGWDPLAKGQSGYSQEFLESLMFNLEDIERATQCFSELNLLGKSDFSTVYRGILRDGSVVVVKCIAKTSCKPDETEFLKGLKILASLRHENLVRLRGFCCSKSRGECFLVYDFVSNASLLRYLDVKRDDDDDAIVLEWSTRVSIIHGIAKGIAYLHGKKGSKGSLVHQNLSAHTVLLDSRYNAVLAYSGLHKLLADDVVFSTLKASAAMGYLAPEYTKTGRLTEKSDVYAFGVMVFQLLSGKRDITQLSRQGVETVSYRDVVDEKLEGKFSESEAAKLWGVALLCTHKSPHLRPYMEDVIQELCD 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32167g00002 428 Gene3D Transferase(Phosphotransferase) domain 1 239 428 - -
Stsc32167g00002 428 Pfam Protein tyrosine and serine/threonine kinase 162 426 IPR001245 GO:0004672|GO:0006468
Stsc32167g00002 428 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 57 427 - -
Stsc32167g00002 428 Gene3D Phosphorylase Kinase; domain 1 130 236 - -
Stsc32167g00002 428 SUPERFAMILY Protein kinase-like (PK-like) 135 426 IPR011009 -
Stsc32167g00002 428 ProSiteProfiles Protein kinase domain profile. 158 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32167g00002 428 FunFam Protein NSP-INTERACTING KINASE 2 130 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32167g00002 Stsc-Chr32167 4595 7525 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32167g00002 2 274 Miscellaneous Gene Families AT4G22730 43.345 7.10e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Stsc32167g00002 PK_Tyr_Ser-Thr 2.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32167g00002 - - qsu:111997683 547.74