Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32120g00001 ATGGGGCACCGTTGCTGCACCAAACAGAAGATCAAAAGAGGACTATGGTCTCCTGAAGAAGATGAGAAGCTTCTCAGATATATCACAACTCATGGCCATAAAAGTTGGAGTTCTGTTCCTAAATTTGCAGGGTTGCAGAGATGCGGAAAGAGTTGTAGATTGAGATGGATAAATTACTTGAGACCAGATCTGAAGAGAGGTTCCTTCACTGCAGAAGAAGAGCAGATCATAATTGACATTCATAGAATTCTCGGAAACAGATGGGCCCAAATAGCAAAGCACCTACCTGGTAGAACAGACAACGAGGTCAAGAATTTCTGGAACTCTTGCATAAAAAAGAAGCTCATTTCTCAAGGCCTTGATCCCCAAACACACACTCTCCTCTCTTCTCATAGAAGAACAACAACCTCATCATCAAACTTCTCTAACAACAACAACAATAATAATAATTCCTTTCTCATTATTACTTCAAATATGCCAAACAATAATAATACTAATAATAGCAATGCTCCCATTATGGAAACTACCCAAACTCTTTCTTCTTCTTCATCACTACCTACTACTCCTAATTATAATAAGGCTCAACCAAGTGTTGTTCAAGCACCGTTATCTCCCATATATGAACCACCAATACTAGATAATAATATTAATAATAATTCATGCATGAATAGCTTATTATGGGATTCAAGAATAACTGATGCTCAAGATTTCAGAGTTGACACATTATTGGAAGATGGTCAAGGAATACAAAACCATGCACCACTGCATGATGCTGATGAGGATGATGATGAGATCAGAGAAGCTAATAACAACATTATTGAGATGAATACTAATAATGCTTCTTTGGAAGGATCTATTAATAATAATAATAATGCTAATAGTAATAACTTTGACTTTGGGTTGTTGGAAAGTGTACTTTACTCTGAATTCATGTCTCATGATATCAACTATATGGATGAACTCGCGTGGAATTTTTAG 978 0.363 MGHRCCTKQKIKRGLWSPEEDEKLLRYITTHGHKSWSSVPKFAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQIIIDIHRILGNRWAQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRTTTSSSNFSNNNNNNNNSFLIITSNMPNNNNTNNSNAPIMETTQTLSSSSSLPTTPNYNKAQPSVVQAPLSPIYEPPILDNNINNNSCMNSLLWDSRITDAQDFRVDTLLEDGQGIQNHAPLHDADEDDDEIREANNNIIEMNTNNASLEGSINNNNNANSNNFDFGLLESVLYSEFMSHDINYMDELAWNF 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32120g00001 325 MobiDBLite consensus disorder prediction 128 195 - -
Stsc32120g00001 325 CDD SANT 68 108 IPR001005 -
Stsc32120g00001 325 SMART sant 12 62 IPR001005 -
Stsc32120g00001 325 SMART sant 65 113 IPR001005 -
Stsc32120g00001 325 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Stsc32120g00001 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Stsc32120g00001 325 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Stsc32120g00001 325 Coils Coil 258 285 - -
Stsc32120g00001 325 FunFam Transcription factor MYB86 67 144 - -
Stsc32120g00001 325 Gene3D - 67 151 - -
Stsc32120g00001 325 Gene3D - 13 65 - -
Stsc32120g00001 325 FunFam MYB transcription factor 5 66 - -
Stsc32120g00001 325 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Stsc32120g00001 325 CDD SANT 16 60 IPR001005 -
Stsc32120g00001 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Stsc32120g00001 325 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Stsc32120g00001 325 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Stsc32120g00001 325 PANTHER MYB DOMAIN PROTEIN 55 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32120g00001 Stsc-Chr32120 1786 4040 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32120g00001 1 325 MYB Transcription Factor Family AT3G12720 48.116 7.94e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc32120g00001 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32120g00001 K09422 - gmx:100811532 310.071