Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32100g00001 ATGGATTGGGTAAGAGGAGACCCTATTGGTCGAGGGAGCTTCGCCACCGTTAGTTTGGCGATTCCAAGAAACTGTTATTCTGTTAAGTCATTGCCTTATCTAACCGCAGTGAAATCCAGCGACGCCAGCGCCTCCTACTGGCTAAAGAACGAGAAGCACGTGCTGGACCGCCTCGGCGGCACGTGCCCCCGAATCATCACCTGCTTTGGCGATGACTACACCTTGGAGAACGGCCGCCACTACTACAACCTCTTCCTGGAGTACGCCTCCCGCGGCAGCCTCTCCGACGAGCTTCGCCGCTGCCGTCTCTCGGAAGCTGAAATTCGGCACCACGTGAAGTCCATCGTTGAAGGTCTGGATCATATTCACAAGAACGGATTCGTACACTGTGATATAAAGCTTCAGAACATACTCGTCTTCGAAAACGGTGAAGTTAAGATTGCGGATTTTGGTTTAGCGAAAGAAACAGGGGAAGAAAAACAGGGGAATAATGGCAAGAAGTGTTTCGAATGCAGGGGAACTCCTATGTTTATGCCGCCGGAATCGGTTAACGACGGCGAGTGCGAGTCTCCGGCGGATATTTGGGCCTTGGGGTGCACGGTGGTGGAGATGGTGACCGGGAAGCCGGCATGGAACATTGCGAACGATTCGAGCATTTGGTCGTTGCTGCTTCGGATCGGAACAGGGGAAGAAGTGCCGGCAATACCAGATGAAATTTCGAAACAAGGGAAGGATTTCTTGGAGAAGTGTTTTGTTAAGGATCCTAAGAAGAGATGGACGGCTGAGATGCTTCTAAATCATCCCTTTCTGGCTTTTGATTCTGATACTGTTTCATTGAAACTGGGTGTGATTGCAAAGGAAAACGAATCCCCAAGAAGCCACTTTGATTTTCCTGATTGGGTTTCTAGTCTTGATTCTTCTTCATTTCCGAGTTCGCACGATTGGGATTCCGATTCCTCGTCGAGTTCGTTTTCGGCGGTGGATCGGCTTCGCAAGCTTGCGACGGGGGGTCGGATGCCGGAGAATTGGCCGGAATCCGATGGGTGGACAAGTGTCAGGTGGAATTGA 1068 0.5103 MDWVRGDPIGRGSFATVSLAIPRNCYSVKSLPYLTAVKSSDASASYWLKNEKHVLDRLGGTCPRIITCFGDDYTLENGRHYYNLFLEYASRGSLSDELRRCRLSEAEIRHHVKSIVEGLDHIHKNGFVHCDIKLQNILVFENGEVKIADFGLAKETGEEKQGNNGKKCFECRGTPMFMPPESVNDGECESPADIWALGCTVVEMVTGKPAWNIANDSSIWSLLLRIGTGEEVPAIPDEISKQGKDFLEKCFVKDPKKRWTAEMLLNHPFLAFDSDTVSLKLGVIAKENESPRSHFDFPDWVSSLDSSSFPSSHDWDSDSSSSSFSAVDRLRKLATGGRMPENWPESDGWTSVRWN 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32100g00001 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 127 139 IPR008271 GO:0004672|GO:0006468
Stsc32100g00001 355 ProSitePatterns Protein kinases ATP-binding region signature. 9 38 IPR017441 GO:0005524
Stsc32100g00001 355 Pfam Protein kinase domain 6 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32100g00001 355 ProSiteProfiles Protein kinase domain profile. 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32100g00001 355 SUPERFAMILY Protein kinase-like (PK-like) 3 322 IPR011009 -
Stsc32100g00001 355 CDD STKc_MAPKKK 2 270 - -
Stsc32100g00001 355 Gene3D Transferase(Phosphotransferase) domain 1 2 303 - -
Stsc32100g00001 355 MobiDBLite consensus disorder prediction 335 355 - -
Stsc32100g00001 355 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 334 - -
Stsc32100g00001 355 SMART serkin_6 3 270 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32100g00001 Stsc-Chr32100 7433 8500 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32100g00001 1 353 MAP Kinase Kinase Kinase AT5G67080 50.689 5.94e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Stsc32100g00001 Pkinase 2.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32100g00001 - - gmx:100798607 447.588