Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc320g00007 ATGGCAGAAACCATGAACAACTCTGTTTCTGCATCAATGCCTTCCCTTTTACCACCTAAGCAAGAACAAGAATCTGCTATGGTGAACATGAAAGTGGAGACCAATGGTGCAGTAGCAACAAATGGGAGCTTAGAGTTGTTTGAGAATAAGAATAAGAAGAGAGGAAGGCCAAGGAAGTGTGATGATTCAAATGCAGAATCATGGAAGATGACAATTTCATATTTACCACCACCACCAGGTTTCCCACAACCGCAGCCTCATTCTGGATTTGAAGGTAGGGGTTTTGCAACTATTTCTGGTGGAGGCTTCACACCACATTCGGTGAAAGTTTTTGCTGGAGAGGATGTTGCTAGAAAGATCATGGCATTCGTCGAAAAGGGTCCGAGAGCAGTTTTTGTTCTTTCTGCCACTGGAGAAATCTCTAATGTTACCATATGTCTTCCTGATAATTCTTGTAGACTTTTGACTTATGAGGGTCGATTCGAGATCTTATCTTTAGCCGGATCATATCTAATCGAAGAGAGTGGTGGCATGAGGACCGGTGGTCTGAGTGTCTCGCTAGCCAGCTCTGGCGGCGACGCCATTGGCGGCAGAGTTGCCGGTCCGTTAATTGCTGCTGGCCTCATTCAACTTGGGTTGGGGAGCTTCAGGCCTCATGCTCCTAGAAAGAAGTACCGCGCGCGCGGAGAGTTCAGGCCGCAGGCTCCTAGAAGTCAGCCTGTGGTGGCTGCGCCTATGGCTGCAGTCTATCCAGACACAAGGGCAGCGACGAACCTTGCGTCGCAAGCAAATCCAGAACAAAGCCAGAGAGAGTTTGCTGCTGCTGCTGTCTGA 834 0.4856 MAETMNNSVSASMPSLLPPKQEQESAMVNMKVETNGAVATNGSLELFENKNKKRGRPRKCDDSNAESWKMTISYLPPPPGFPQPQPHSGFEGRGFATISGGGFTPHSVKVFAGEDVARKIMAFVEKGPRAVFVLSATGEISNVTICLPDNSCRLLTYEGRFEILSLAGSYLIEESGGMRTGGLSVSLASSGGDAIGGRVAGPLIAAGLIQLGLGSFRPHAPRKKYRARGEFRPQAPRSQPVVAAPMAAVYPDTRAATNLASQANPEQSQREFAAAAV 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc320g00007 277 CDD DUF296 104 216 IPR005175 -
Stsc320g00007 277 ProSiteProfiles PPC domain profile profile. 100 237 IPR005175 -
Stsc320g00007 277 SUPERFAMILY AF0104/ALDC/Ptd012-like 102 231 - -
Stsc320g00007 277 MobiDBLite consensus disorder prediction 47 63 - -
Stsc320g00007 277 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 19 251 IPR039605 GO:0003680
Stsc320g00007 277 MobiDBLite consensus disorder prediction 1 27 - -
Stsc320g00007 277 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 216 IPR005175 -
Stsc320g00007 277 MobiDBLite consensus disorder prediction 39 63 - -
Stsc320g00007 277 Gene3D - 105 233 - -
Stsc320g00007 277 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc320g00007 Stsc-Chr320 46648 49402 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc320g00007 13 261 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 41.219 4.14e-44 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc320g00007 - - aip:107626418 179.489