Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc320g00003 ATGGCCTCTTGCGACGACGACGACGACGAATTCTCTCTCCTCCACCAACCCTACGCGCCACCGTCACATCACCACAACTACTCTGCCGCCGTCGCCGCCGCTACAACCGCCGTACAAGCTAAGCCTGTATCCGACACCGACGCCGATGATTACAGCAATCCCTTCGATCAAGACACCACCGCCACCGAGAAGAGAAAAGATCGAGACGAGATCGGCAACAATAACAACAACAGCAACGATGCATCGTACGGTTTCAACAAACGAGCTAAGCCTACGACGAGCGCTGCCGGATCGGGATCTGCAGGCTCCGGCGCCGAGTACCGGAAGGACAGGGAGGAGTGGAGCGACACGGCGATCGTGTGTTTGCTAGATGCGTACACGGAGAAGTTCACGCAGCTGAATCGGGGGAATCTGAGGGGGAGGGACTGGGAGGAGGTGGCGGCGGTGGTTTCGGAGCGGTGCGAGAACCAGTCGAAGAGCGTGGAGCAGTGCAAGAATAAGGTCGATAATCTGAAGAAGAGGTACAAGCTTGAGAGGCACAGGATCAGCAGCGGATGCATCACTGCGAGCCACTGGCCTTGGTTCAAGCACATGGAGAACATCGTCGGGAACTCGCTTTCCGCGGGGAAGTTCTCCGGTGGCGACGAGGACAAGTCTGTCGTCGCCTCACCCGTGGGGAACTCCCCTAGGCAACCGAAGAGATATGGAGCGGCAACACCCAGCAGTGGAGGACAAGTGAATAGCATGAAGTCCAAAACGTTGTCAAACCTTAGATGGCGAAGGGTAATCCTCAAAATTAGTGGTGCTGCTCTTTCAGGATCTGATACCTGCAATATTGACCCAAAGGTAGCTATGTTAATTTCAAGAGAAGTTGCAATAGCCTCCCGCCTTGGCGTTGAGGTCGCCATTGTTGTTGGAGGTCGGAATTTCTTCTGTGGAGATGCATGGGTAACTGCAACAGGATTAGAAAGATGTACTGCATACCAAGTTGGCATGATGGCAACTATGATGAATTCAATATTGCTCCAATCAACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAAGTTCAGTCAGCATGCAGGAGTTCGCTGAACCTTACAATAGGCACCGAGCCATCAGACATCTTGAGAAAGGAAGAGTGGTTATATTTGGTGGTATCGGCTTTGGTACTGGAAATCCACTATTCTCAACTGATATAGCTGCAGCTCTTAGAGCTTCAGAGCTAAATGCTGAAGCTGTTCTCAAGGGTACCAATGTAGATGGTGTATATGACTGCAACTCCAGAGACAGCAATTTCACTTTTGAGCACATATCCTTCAGGGAGCTAGTATCAAGAGGAGTCACTCCTATGGACATGACAGCACTGACATTCTGTGAGGAAAATGCTATTCCTGTTGTGGTTTTCAATATACTGGAGCCTGGGAACATATCAAAGGCTTTGTGTGGAGAACAAGTTGGGACACTAGTTGACCAAACTGGAGCAATAAGCTAA 1497 0.5077 MASCDDDDDEFSLLHQPYAPPSHHHNYSAAVAAATTAVQAKPVSDTDADDYSNPFDQDTTATEKRKDRDEIGNNNNNSNDASYGFNKRAKPTTSAAGSGSAGSGAEYRKDREEWSDTAIVCLLDAYTEKFTQLNRGNLRGRDWEEVAAVVSERCENQSKSVEQCKNKVDNLKKRYKLERHRISSGCITASHWPWFKHMENIVGNSLSAGKFSGGDEDKSVVASPVGNSPRQPKRYGAATPSSGGQVNSMKSKTLSNLRWRRVILKISGAALSGSDTCNIDPKVAMLISREVAIASRLGVEVAIVVGGRNFFCGDAWVTATGLERCTAYQVGMMATMMNSILLQSTLEKMGVQTRVQSSVSMQEFAEPYNRHRAIRHLEKGRVVIFGGIGFGTGNPLFSTDIAAALRASELNAEAVLKGTNVDGVYDCNSRDSNFTFEHISFRELVSRGVTPMDMTALTFCEENAIPVVVFNILEPGNISKALCGEQVGTLVDQTGAIS 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc320g00003 498 MobiDBLite consensus disorder prediction 234 250 - -
Stsc320g00003 498 SUPERFAMILY Carbamate kinase-like 258 491 IPR036393 -
Stsc320g00003 498 FunFam Uridylate kinase isoform A 251 497 - -
Stsc320g00003 498 Gene3D - 254 492 IPR036393 -
Stsc320g00003 498 Hamap Uridylate kinase [pyrH]. 257 492 IPR015963 GO:0005737|GO:0006221|GO:0033862
Stsc320g00003 498 MobiDBLite consensus disorder prediction 74 100 - -
Stsc320g00003 498 Pfam Amino acid kinase family 261 471 IPR001048 -
Stsc320g00003 498 Gene3D - 114 177 - -
Stsc320g00003 498 FunFam Aspartate/glutamate/uridylate kinase family protein 114 177 - -
Stsc320g00003 498 MobiDBLite consensus disorder prediction 59 73 - -
Stsc320g00003 498 CDD AAK_UMPK-PyrH-Ec 260 492 IPR015963 GO:0005737|GO:0006221|GO:0033862
Stsc320g00003 498 Coils Coil 154 181 - -
Stsc320g00003 498 MobiDBLite consensus disorder prediction 1 109 - -
Stsc320g00003 498 PANTHER URIDYLATE KINASE 107 497 - -
Stsc320g00003 498 MobiDBLite consensus disorder prediction 213 250 - -
Stsc320g00003 498 Pfam Myb/SANT-like DNA-binding domain 111 200 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc320g00003 Stsc-Chr320 12626 16106 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc320g00003 94 226 Trihelix Transcription Factor Family AT3G14180 35.766 4.35e-17 81.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Stsc320g00003 AA_kinase 1.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc320g00003 - - gmx:100805176 773.467