Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32096g00001 ATGGATCGAGAGACTGGATTGAGAATGAATCGACGGATACATGGGGATTTTCGTGGTTTTGATTCCTTTGTTCCTTCAAGAAGCCTCAATATTGTTCATCATAACATTGATTCACATTGTGTTCTTGATTCTTGTGACAATGTTATAATGTATGGGATGACACAGTCTAATGGGATTCAACATCAACTTGATTTCAATACGAGTTATCAAGATTCGCCGCTGCCGCCTGACTTATATTATTCTGGCCGGAATCCTTCATCAAGTACTGGTGCTTTACCTCTGCCTCAAAATTACAGAGCATCTCACCAGTTATCAAGATTTTCAGCTCCCAATTTTCATCAAAGCTCAATACACAATTCAAGTTCAAGTTCTGGGACATATTATCGTGCATCTGGTAACAGACGCAGTCGTGGATTTCCTCGCTATTCAAGGCACCAGAACATGTATCTTCCTACAGCTACTGCATCGTTACATCAACTTCAGTCGAATCCTTTGCACAGTGCTGCAGTCCACTACTCACATGACAGTTCCGAGGTGCGTCCCAGGCATGCTGGCCCTGTACCAACCACCGGTAGGCAAATGTATCAGCACAATAGAAGAGGACTTCCCCGAACAATAAATCTTGTTCATGGGAATTTTCGTCGGGTGGACTTAGTCCAAGTTGATGATGTTGGGATGCTTGTTAGAGATGCTGAAGACATGTCTTATGAGCGATTGAATGCATTGGGAGAGCATATTGGCAACGTAAGCACCGGTTTATCGGAGGAAACAATAACCAATCAAATGAAGACAAAAGCATATTTAATGGCTGCTAATGCTGTTAATTTGGAGGAGGCAACTTCTCAGGAGTTGGAAGCTGATCTTTGTGTAATATGCCAGGATGAATACAGGAAGCAAGATATGCTTGGAGTTCTCCACTGTGGGCATGAATTTCATGCTGATTGTTTGAGGAAATGGTTGCTTGTGAGAAATGTCTGCCCCATGTGTAAATCACAAGCATTGATTCCTGCAGTAGAAACTAATTAA 1026 0.422 MDRETGLRMNRRIHGDFRGFDSFVPSRSLNIVHHNIDSHCVLDSCDNVIMYGMTQSNGIQHQLDFNTSYQDSPLPPDLYYSGRNPSSSTGALPLPQNYRASHQLSRFSAPNFHQSSIHNSSSSSGTYYRASGNRRSRGFPRYSRHQNMYLPTATASLHQLQSNPLHSAAVHYSHDSSEVRPRHAGPVPTTGRQMYQHNRRGLPRTINLVHGNFRRVDLVQVDDVGMLVRDAEDMSYERLNALGEHIGNVSTGLSEETITNQMKTKAYLMAANAVNLEEATSQELEADLCVICQDEYRKQDMLGVLHCGHEFHADCLRKWLLVRNVCPMCKSQALIPAVETN 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32096g00001 341 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 78 334 IPR045191 GO:0061630
Stsc32096g00001 341 MobiDBLite consensus disorder prediction 174 194 - -
Stsc32096g00001 341 MobiDBLite consensus disorder prediction 112 141 - -
Stsc32096g00001 341 SUPERFAMILY RING/U-box 282 334 - -
Stsc32096g00001 341 ProSiteProfiles Zinc finger RING-type profile. 289 330 IPR001841 -
Stsc32096g00001 341 CDD RING-H2_RNF24-like 287 333 - -
Stsc32096g00001 341 FunFam E3 ubiquitin ligase BIG BROTHER 249 334 - -
Stsc32096g00001 341 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 334 IPR013083 -
Stsc32096g00001 341 SMART ring_2 289 329 IPR001841 -
Stsc32096g00001 341 Pfam Ring finger domain 288 330 IPR001841 -
Stsc32096g00001 341 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32096g00001 Stsc-Chr32096 933 3796 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32096g00001 230 334 C3H Transcription Factor Family AT2G15530 48.598 2.15e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32096g00001 K19041 - adu:107478552 249.595