LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc32078g00001	ATGGGTGGGTGTTTTCCTTGTTTTGGATCATCCAACAAGGAGGAAAGTGGTGGTGGTGGTGGTGGGTTGAAGAAGGAAGTTGCAAAAAAGGAATCTTTCAAAGAATCAACAGCTCCTCAGGTTCATTTCCCCAGCAGGGTTAGCTCAGATAAATCAAAGTCACGGAGTGGCTCGGATCCTAAGAAGGAAACACCAGTTCCAAACGATGGCCCAACAGCTAATATTGCTGCTCAAACATTTACATTTCGAGAGCTTGCAGCTGCCACAAAAAATTTTAGGCCAGAATGTTTACTTGGGGAAGGAGGTTTTGGGCGCGTTTACAAGGGTCGGCTTGAGAGCACAGGACAGATAGTTGCTGTAAAGCAACTTGATCGAAATGGCCTTCAAGGGAATCGAGAATTTTTGGTTGAGGTTCTCATGCTTAGTCTCTTACATCACCCCAATCTCGTGAACTTAATTGGTTATTGTGCTGATGGTGATCAGCGGCTCCTTGTGTATGAATTCATGCCATTAGGATCTTTGGAGGATCATTTACATGATCTCCCTCCTGACAGGGAGCCTCTGGACTGGAACACTAGGATGAAAATTGCAGCTGGTGCGGCGAAGGGTTTGGAATATTTGCACGACAAGGCTAACCCCCCTGTGATATATAGAGACTTAAAATCTTCCAACATCCTTCTAGATGAGGGCTATCATCCCAAGTTATCGGATTTTGGGCTGGCTAAACTCGGTCCTGTTGGTGACAAGACACNNNNNNNNNNACCGGAATATGCTATGACTGGTCAACTCACTCTGAAGTCTGATGTTTACAGCTTTGGAGTTGTGTTCCTTGAACTTATTACGGGGCGCAAGGCTATTGATAACACACGTGCACATGGAGAGCATAATCTTGTTGCTTGGGCCCGGCCTCTTTTTAAAGATCGCAGAAAGTTCCCCAAAATGGCTGATCCTCTACTCCAAGGCCGATATCCAATGCGGGGGCTGTACCAAGCACTTGCAGTTGCAGCAATGTGCTTGCAGGAACAAGCTGCCACAAGGCCTCTTATTGGGGATGTCGTAACTGCTCTCACATATCTGGCCTCCCAGACATATGAACCAAATGTAGCGAATCAGTCAAACCGACTTGGTCCATCAACCCCCCGGAGCAGGGATGACAGAAGGAACATGATAGATGGCGTGGATAGCCCGGACCAGGGGCGTCTTGGCTCCCCTTCCACCCACAGAAACTCACCTGATTACAGGAGGAGAGACAATAGGGAATTGAGTGTTGGAACAGAGTTAGGCAGGAGTGTCTCTGGTGGTGGTGGGTCCGGGAGGAAATGGGGACTGGATGATGTCGAAAGGCAAGATTCTCGTAGAGACAGCCCTGTAAATACTGCAAGAGCTAGAGAGACTCCAAGGAACCGTGACCTGGACAGGGAACGCGCAGTTGCAGAAGCAAAAGTATGGGGTGAGAATTGGAGGGAAAAGAAGAGAGCTAATGCCATGGGAAGCTTTGATGCCACAAATGAGTGA	1515	0.4779	MGGCFPCFGSSNKEESGGGGGGLKKEVAKKESFKESTAPQVHFPSRVSSDKSKSRSGSDPKKETPVPNDGPTANIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDREPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTXXXXPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRAHGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYEPNVANQSNRLGPSTPRSRDDRRNMIDGVDSPDQGRLGSPSTHRNSPDYRRRDNRELSVGTELGRSVSGGGGSGRKWGLDDVERQDSRRDSPVNTARARETPRNRDLDRERAVAEAKVWGENWREKKRANAMGSFDATNE	504

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc32078g00001	504	MobiDBLite	consensus disorder prediction	379	393	-	-
	Stsc32078g00001	504	FunFam	Serine/threonine-protein kinase PBS1	169	374	-	-
	Stsc32078g00001	504	MobiDBLite	consensus disorder prediction	1	73	-	-
	Stsc32078g00001	504	ProSitePatterns	Protein kinases ATP-binding region signature.	98	121	IPR017441	GO:0005524
	Stsc32078g00001	504	SMART	serkin_6	92	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc32078g00001	504	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	215	227	IPR008271	GO:0004672\|GO:0006468
	Stsc32078g00001	504	FunFam	Serine/threonine-protein kinase PBS1	66	168	-	-
	Stsc32078g00001	504	Gene3D	Phosphorylase Kinase; domain 1	76	168	-	-
	Stsc32078g00001	504	ProSiteProfiles	Protein kinase domain profile.	92	359	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Stsc32078g00001	504	MobiDBLite	consensus disorder prediction	441	473	-	-
	Stsc32078g00001	504	SUPERFAMILY	Protein kinase-like (PK-like)	75	356	IPR011009	-
	Stsc32078g00001	504	Gene3D	Transferase(Phosphotransferase) domain 1	169	375	-	-
	Stsc32078g00001	504	MobiDBLite	consensus disorder prediction	409	423	-	-
	Stsc32078g00001	504	PANTHER	OS07G0668900 PROTEIN	4	368	-	-
	Stsc32078g00001	504	MobiDBLite	consensus disorder prediction	48	62	-	-
	Stsc32078g00001	504	MobiDBLite	consensus disorder prediction	368	473	-	-
	Stsc32078g00001	504	CDD	STKc_IRAK	98	357	-	-
	Stsc32078g00001	504	Pfam	Protein kinase domain	97	296	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc32078g00001	Stsc-Chr32078	3765	9555	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc32078g00001	72	361	Glycoside Hydrolase	AT3G07070	72.000	2.62e-155	447

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-1	Stsc32078g00001		Pkinase	7.3e-39	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc32078g00001	-		-	adu:107468111	905.59