Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32076g00001 AACGACATCGTTTTATGCCTCGACGCAAATCAACTCATAGAGGATCATTTTCTCGGTGCAACTCTCTACTGGTTCAACCAGAAAACCGAACCGAACCGGAATAATGAGAACCGGACCGGTTCGTTTTTGCTCAAGATCAGAAAAACCGATAAGAGGAGAATTCTTGGAGCTTATATCAGCCACATCCACGACGTCGCCGGCAACATGGAGAGCAACGGAAAACGCGAATTGAGGCTTTTTGTGAACGCTGGAGATGGCGGCGGAGGAGTTAGGTGGAGATCGGTTCCGTTCACGCATCCTTCCACGTTCGAAACGATCGCCATGGGGGAAGATCTCAGGAGCAAGGTGAAATCAGATCTGGAATCGTTCCTCCGCGGGAAAAAGTATTACCGGCGGCTCGGCCGAGCTTGGAGACGGAGCTTCCTTCTGTACGGTCCAGCCGGCACCGGAAAATCGAGCTTCGTCGCAGCTATGGCGAATTTCCTTGGATACGACGTTTACGACGTCGATCTCGAGAAAGTTCGCGGCGGTGATTCAGATCTGAAGCTCCTCCTCCTAGAGACGACGCCGAAATCGATCATCGTCGTGGAAGATGTCGACAAGTTTGTTGTTTCCGCCACGACGGAATCGTCGCTGCCGGCGACGGTGAGCGCCTCGGGGATGCTGAATTTCATGGACGGGATTCTTAGCGCGTGTTGTGGAGATGAGCGCGTTATGGTGTTCACGATGAGCAGCAAAGACCGGGTCGACCCGGATTTACTTCGTCCGGGTCGGGTTGACGTTCACATTCATTTTCCTGCGTGCGATTTCTCGTTGTTCAAGGAACTCGCGAGTAGCCATTTGGGCGTGAAGGAGCACAAGCTGTTCCCGCGCGTGGAGGAGATTTTGGCGCGTGGGGTGAGTATTAGCCCTGCGGAGATTGGCGAGTTAATGATTGCGAACCGTGGGTCACCGAGTCGGGCGATAAAATCAGTAATCGGAGCGCTGAGGTATGACGGCGATGGGATCGGACGGCGGGAAAGAGAGGAAGATGATTTTGATGACGTGGACGGTGGAGATGCGGTGCTGTGTACTGAAGGGTGCAATGCTGTTAAGGATTTTCGTAAATTGTATGGTTTGTTCAAATCAAGAAGTGGGAAAAGATCTCGACCGTCCAATACCTCAGTCCATGATAGATTATAG 1182 0.5228 NDIVLCLDANQLIEDHFLGATLYWFNQKTEPNRNNENRTGSFLLKIRKTDKRRILGAYISHIHDVAGNMESNGKRELRLFVNAGDGGGGVRWRSVPFTHPSTFETIAMGEDLRSKVKSDLESFLRGKKYYRRLGRAWRRSFLLYGPAGTGKSSFVAAMANFLGYDVYDVDLEKVRGGDSDLKLLLLETTPKSIIVVEDVDKFVVSATTESSLPATVSASGMLNFMDGILSACCGDERVMVFTMSSKDRVDPDLLRPGRVDVHIHFPACDFSLFKELASSHLGVKEHKLFPRVEEILARGVSISPAEIGELMIANRGSPSRAIKSVIGALRYDGDGIGRREREEDDFDDVDGGDAVLCTEGCNAVKDFRKLYGLFKSRSGKRSRPSNTSVHDRL 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32076g00001 393 Pfam ATPase family associated with various cellular activities (AAA) 142 266 IPR003959 GO:0005524|GO:0016887
Stsc32076g00001 393 PANTHER BCS1 AAA-TYPE ATPASE 2 338 - -
Stsc32076g00001 393 Gene3D - 90 267 IPR027417 -
Stsc32076g00001 393 SMART AAA_5 137 269 IPR003593 GO:0016887
Stsc32076g00001 393 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 322 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32076g00001 Stsc-Chr32076 1137 2573 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32076g00001 133 316 Calmodulin-binding Proteins AT3G56690 24.227 3.21e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32076g00001 - K08900 gmx:100805212 483.411