Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32067g00002 ATGTTTTTAATGTTCTTGTTGTTGACAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGGCTAAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCTCAGGAGGAAGAAAATCTCATCATTGAACTTCATGCTGTCTTAGGGAATAGATGGTCTCAGATTGCGGCGCAGCTTCCGGGGAGGACAGACAATGAAATCAAGAATCTGTGGAATTCATGCTTGAAGAAGAAGCTGAGGCAAAGAGGGATAGACCCTGTGACACACAAGCCATTATCTGAGATTCAGAATAATAATAATAATAATAATAATAATGGATTAGAGGAGAAGAGCCAGGGGCAAGAGAAAGCATTGTCCAATGATAATAATGAATTGAACTTGTTGAGATCAGAGAGTTCTAATAAGTCTGATGCAGCTTCTTCCTATGATCATCATCATCATCAACATCAACAAGGACAAGGGCTTGTTCCAACAACAACAACAGAGATGGAAGGTTCTTTTGACACTACTACTAGGTTCATGGCTAACACTTGCTCTGATTTCATGGGGAATTACAACAACATGAGTAGCTATGCATCATCATCTTCCACTGTCACTGTCACCGACAACAACTCAAACTCTTGCTGCAATTGGTTCACACAACAAACATCATCAAGGCCTTTTGATATCAACTCAGATTTCACCTCCTCATCATCCTTCCTACCTGCTTCCTTTTGCTATAAGCAGCCACCAGAATGTCTTCATCAAGACATGAATGTGAAGAACACCACCACCATGGTTTCTTCCTCTTCATGGGGATTGGTGACAGATTGCAGCAGTGTTTCCCCAATGTTGATGGAAGCAGAAGAGGCAAAGTGGTCTGAGTATCTTCAAAATCCAATGTTGATGCTTGCAGCTGTTCACAACAACCAAGAGATAAAGCCTCTTCCTCCAACAACAAATCATTTGGTTCCTGATACTTTAGGGGCTATGATGTTGCCTCATTCCAAGCACCAACACCACCAAACATCACAAACTTCTTCTACCACTACCTTCTCCAAGGACATCCAGAACCTAACAGCAGCCTTTGGACATATATAA 1086 0.4144 MFLMFLLLTGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEIQNNNNNNNNNGLEEKSQGQEKALSNDNNELNLLRSESSNKSDAASSYDHHHHQHQQGQGLVPTTTTEMEGSFDTTTRFMANTCSDFMGNYNNMSSYASSSSTVTVTDNNSNSCCNWFTQQTSSRPFDINSDFTSSSSFLPASFCYKQPPECLHQDMNVKNTTTMVSSSSWGLVTDCSSVSPMLMEAEEAKWSEYLQNPMLMLAAVHNNQEIKPLPPTTNHLVPDTLGAMMLPHSKHQHHQTSQTSSTTTFSKDIQNLTAAFGHI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32067g00002 361 PANTHER MYB DOMAIN PROTEIN 55 8 222 - -
Stsc32067g00002 361 Pfam Myb-like DNA-binding domain 32 76 IPR001005 -
Stsc32067g00002 361 SUPERFAMILY Homeodomain-like 12 85 IPR009057 -
Stsc32067g00002 361 MobiDBLite consensus disorder prediction 88 120 - -
Stsc32067g00002 361 Gene3D - 33 141 - -
Stsc32067g00002 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 27 81 IPR017930 -
Stsc32067g00002 361 MobiDBLite consensus disorder prediction 133 164 - -
Stsc32067g00002 361 ProSiteProfiles Myb-like domain profile. 27 77 IPR001005 -
Stsc32067g00002 361 CDD SANT 34 74 IPR001005 -
Stsc32067g00002 361 Gene3D - 6 31 - -
Stsc32067g00002 361 SMART sant 31 79 IPR001005 -
Stsc32067g00002 361 FunFam MYB transcription factor 33 105 - -
Stsc32067g00002 361 MobiDBLite consensus disorder prediction 93 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32067g00002 Stsc-Chr32067 3879 5638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32067g00002 9 103 MYB Transcription Factor Family AT4G01680 87.368 1.87e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc32067g00002 Myb_DNA-binding 1.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32067g00002 K09422 - gmx:100037467 285.804