Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32067g00001 ATGGGAAGGCACTCTTGCTGTTACAAGCAGAAGCTTAGGAAGGGTCTATGGTCTCCTGAGGAGGATGAAAAGCTTCTCAGGCACATCACCAAGTATGGTCATGGATGTTGGAGTTCTGTTCCAAAGCAAGCAGGTTTGCAGAGGTGTGGTAAGAGTTGCAGGCTAAGGTGGATCAATTACTTAAGGCCTGATTTAAAGAGAGGTACATTTTCTCAGGAGGAAGAAAATCTCATCATTGAACTTCATGCTGTCTTAGGGAATAGATGGTCTCAGATTGCGGCGCAGCTTCCGGGGAGGACAGACAATGAAATCAAGAATCTGTGGAATTCATGCTTGAAGAAGAAGCTGAGGCAAAGAGGGATAGACCCTGTGACACACAAGCCATTATCTGAGATTCAGAATAATAATAATAATAATAATAATAATGGATTAGAGGAGAAGAGCCAGGGGCAAGAGAAAGCATTGTCCAATGATAATAATGAATTGAACTTGTTGAGATCAGAGAGTTCTAATAAGTCTGATGCAGCTTCTTCCTATGATCATCATCATCATCAACATCAACAAGGACAAGGGCTTGTTCCAACAACAACAACAGAGATGGAAGGTTCTTTTGACACTACTACTAGGTTCATGGCTAACACTTGCTCTGATTTCATGGGGAATTACAACAACATGAGTAGCTATGCATCATCATCTTCCACTGTCACTGTCACCGACAACAACTCAAACTCTTGCTGCAATTGGTTCACACAACAAACATCATCAAGGCCTTTTGATATCAACTCAGATTTCACCTCCTCATCATCCTTCCTACCTGCTTCCTTTTGCTATAAGCAGCCACCAGAATGTCTTCATCAAGACATGAATGTGAAGAACACCACCACCATGGTTTCTTCCTCTTCATGGGGATTGGTGACAGATTGCAGCAGTGTTTCCCCAATGTTGATGGAAGCAGAAGAGGCAAAGTGGTCTGAGTATCTTCAAAATCCAATGTTGATGCTTGCAGCTGTTCACAACAACCAAGAGATAAAGCCTCTTCCTCCAACAACAAATCATTTGGTTCCTGATACTTTAGGGGCTATGATGTTGCCTCATTCCAAGCACCAACACCACCAAACATCACAAACTTCTTCTACCACTACCTTCTCCAAGGACATCCAGAACCTAACAGCAGCCTTTGGACATATATAA 1191 0.4249 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEIQNNNNNNNNNGLEEKSQGQEKALSNDNNELNLLRSESSNKSDAASSYDHHHHQHQQGQGLVPTTTTEMEGSFDTTTRFMANTCSDFMGNYNNMSSYASSSSTVTVTDNNSNSCCNWFTQQTSSRPFDINSDFTSSSSFLPASFCYKQPPECLHQDMNVKNTTTMVSSSSWGLVTDCSSVSPMLMEAEEAKWSEYLQNPMLMLAAVHNNQEIKPLPPTTNHLVPDTLGAMMLPHSKHQHHQTSQTSSTTTFSKDIQNLTAAFGHI 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32067g00001 396 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc32067g00001 396 SMART sant 13 63 IPR001005 -
Stsc32067g00001 396 SMART sant 66 114 IPR001005 -
Stsc32067g00001 396 FunFam Myb transcription factor 11 67 - -
Stsc32067g00001 396 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc32067g00001 396 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Stsc32067g00001 396 CDD SANT 17 61 IPR001005 -
Stsc32067g00001 396 MobiDBLite consensus disorder prediction 123 155 - -
Stsc32067g00001 396 Gene3D - 69 161 - -
Stsc32067g00001 396 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Stsc32067g00001 396 MobiDBLite consensus disorder prediction 168 199 - -
Stsc32067g00001 396 Gene3D - 11 67 - -
Stsc32067g00001 396 MobiDBLite consensus disorder prediction 128 155 - -
Stsc32067g00001 396 CDD SANT 69 109 IPR001005 -
Stsc32067g00001 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc32067g00001 396 FunFam MYB transcription factor 68 140 - -
Stsc32067g00001 396 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc32067g00001 396 PANTHER MYB DOMAIN PROTEIN 55 1 257 - -
Stsc32067g00001 396 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32067g00001 Stsc-Chr32067 3879 5638 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32067g00001 1 138 MYB Transcription Factor Family AT4G01680 91.304 4.67e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc32067g00001 Myb_DNA-binding 1.8e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32067g00001 K09422 - gmx:100037467 384.03