Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32065g00001 ATGGGTGATAACAATGGAGGTAGCGGTTCTTCTAATGAAATCAATGGCGGCATCATCAAGGAGCAAGACCGGTTGCTGCCAATAGCAAATGTTGGTAGGATCATGAAGCAGATTCTTCCACAGAACGCGAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAATGTGTGTCGGAGTTCATCAGCTTCGTGACGAGTGAGGCGTCCGAGAAGTGCCGGAAGGAGAGGAGGAAGACCGTTAATGGTGATGACATTTGCTGGGCGCTCGCAACGCTTGGTTTTGATGACTATGCCGAAGGGATGAGAAGGTATTTACATAGATACAGAGAGTTAGAGGTTGATAATAATAATAATAATAATAACAATAATAATAAAGAGAGGAAATAA 387 0.4419 MGDNNGGSGSSNEINGGIIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEGMRRYLHRYRELEVDNNNNNNNNNNKERK 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32065g00001 128 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Stsc32065g00001 128 SUPERFAMILY Histone-fold 22 126 IPR009072 GO:0046982
Stsc32065g00001 128 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc32065g00001 128 Coils Coil 108 128 - -
Stsc32065g00001 128 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc32065g00001 128 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Stsc32065g00001 128 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Stsc32065g00001 128 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Stsc32065g00001 128 FunFam Nuclear transcription factor Y subunit B-3 15 128 - -
Stsc32065g00001 128 Gene3D Histone, subunit A 17 128 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32065g00001 Stsc-Chr32065 4351 5091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32065g00001 18 119 CCAAT-HAP3 Transcription Factor Family AT2G47810 77.451 2.33e-58 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc32065g00001 CBFD_NFYB_HMF 5.4e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32065g00001 K08065 - mtr:11422870 197.978