Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32024g00003 GATCAAAGGGACTGCTATTCTGAACTCAAATTGGTTGCAAAAATGGAAGCAGATGATACTTATGTTGAGTATGTGCCCGTGGCCAAGCGTCGTGCCATGGAAGCTCAGAAGATTCTCCAACGCAAGGGCCAGGCCTCTACTGCCAGTGATGCTGATCTTGAGAAATTAAGAGTAGCTGAAACTAAGCTCAGTCTTCTGGTTAAGGCTTCGCAGTTGAAACGAAAGCAGCCTGAGATTAGTGCAACAGAACAGATTGTTCAACAAGAGAAGGAAATGATTGAGAATTTGTCAGATAGAAAAACGCTTATGTCTGTTCATGAATTGGCTAAGGGGATTACTTATACAGGACCATTGCTTACTGGGTGGAAGCCACCTTTACAGGTGAGAAGGATGTCTAAAAAGCAATGTGATTTGATTCGCAAGCAGTGGCAGCATATAATGGTTGATGGTGAAGATATCCCACCTCCAACTAAAATTTTTAAGGATATGAGGTTTCCGGAGCCGGTTTTGAAGAAATTGAAAGCTAAGGGGATTTTGCAACCAACACCCATTCAGGTGCAAGGCCTTCCTGTTATCTTATCTGGGAGGGATATGATTGGTGTTGCTTTCACAGGCTCAGGAAAAACCCTGGTCTTTGCACTATGCCAACCAAAATTCAAAACTTCGCCAGAAGTGCTTTGGTGA 684 0.4342 DQRDCYSELKLVAKMEADDTYVEYVPVAKRRAMEAQKILQRKGQASTASDADLEKLRVAETKLSLLVKASQLKRKQPEISATEQIVQQEKEMIENLSDRKTLMSVHELAKGITYTGPLLTGWKPPLQVRRMSKKQCDLIRKQWQHIMVDGEDIPPPTKIFKDMRFPEPVLKKLKAKGILQPTPIQVQGLPVILSGRDMIGVAFTGSGKTLVFALCQPKFKTSPEVLW 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32024g00003 227 Coils Coil 79 99 - -
Stsc32024g00003 227 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 158 186 IPR014014 GO:0003724
Stsc32024g00003 227 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 143 215 IPR027417 -
Stsc32024g00003 227 Gene3D - 124 216 IPR027417 -
Stsc32024g00003 227 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 146 214 - -
Stsc32024g00003 227 Pfam DEAD/DEAH box helicase 182 214 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32024g00003 Stsc-Chr32024 8632 9315 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32024g00003 156 225 Eukaryotic Initiation Factors Gene Family AT3G19760 40.278 5.30e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32024g00003 K13116 - gmx:100819984 336.65