Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc32006g00001 ATGAAGATCATAGATCAGCACTTTCCTCAATTCCTCACTACAATAATAATTCTTATTACACAATCCGTAAATGCTCTAAGAAATTGTGGAGACTGTGGGCACATCAAAGTACCATACCCACTAAGCACATCTCCGAATTGTGGGGACCAGAGTTACAAGATCAGATGCAATTCGGGTACGCTTTGGTTCGACACAATTAACGGTTCCTCGTACATCATCACCTCCATCAATCCCACGTTTCAGCGTCTTGTGATTCAGCCGCCGGGCTTGGCCAACAACACGTGCATGTCACGTGACTTCAAGAACGAAGGGATGTGGCTTGACACAAACTCACCCTTCAACATTACTTCTAGCAACACTTTGATCCTCATGAACTGCTCCCAAGAGATCTTGACCATGTTATTCAACTGTTCCTCAACCAGCATTTGCCATAAGTACATTCGTGAGGGCAATCCCGTCATTTCCAGGGATTGTGGCGCGACGAGCCGCGCCTCGAAATTGTGCTGTCATATAAAGACTGGTGGGTCTGCTACAGCGTATAGGATTAGGGTTAGAGATGATCGTTGTGCGGCTTATGCTAGCTTTCCCAATTTGGACCCCTCTTTGCCTGTGAGTATGTGGCGGCCGGGGGTGGAGATAGAGTGGCAGCTTCCGGCCGAGCCGCCATGCAAGGTAGCGGGGGATTGCTTGGATTTGGCGAACTCTGGTTGTTTGCCGGATCCGGCTGGCGGTGGAGGAGGGAAGTGTTTGTGCAATGCTGGCTTTCGGTGGGATCCTGTGAATGGAAAATGTCAAGATACCAAGTGTCAGCATGGAAGAGGATGCAAGCTTCGTAAGAAATCCCCACTTATTGGAGGGTTGATATTGGCTGGGACTATCATGGCAGCAGGAGCCATATTCACTGCAATGGGGTATTACTTTCAGAGGAAAAGGATGAAAAGAGAGATCCAAAAAAGAATAACAAGCAAAGCAAACATGATACTGAACTCAGACAATAACAACGGCAGATCCGCAAAAGTGTTCACCATAAAGGAAATCACAAAAGCAACTAACAACTTCTCCAAATCCAACCTCCTCGGTGCCGGCGGCTTTGGCGAGGTATTCAAGGGTATTCTCGATGACGGAACCATCACAGCCATCAAGAGAGCAAAGCATGGCAACATAAGAGGCATTGATCAAATCCTGAATGAGGTTAAGATCCTTTGCCAGGTCAACCATAGAAGCTTAGTGAGGCTATTGGGTTGCTGTGTTGAGCTTCCAAATGAGCCTGTTCTTGTCTATGAGTATGTCTCTAATGGCACCTTGTTTGACCACCTTCACAACAAGAACTCCAGCAAATGGATCCGTCTTGGCTGGCATTCAAGGCTAAGAATCGCACACCAAACCGCTGAAGGGCTCGCGTATCTTCACGATGCAGCCATACCCAAAATCTACCATAGAGATATCAAGTCAAGCAACATTCTCTTAGACGAAAAACTCGATGCAAAGGTCTCCGATTTCGGGCTTTCGAAGTTAGCGGCCAGCGAAGCTAGCCACATAACAACGTGCGCTCAGGGGACACTGGGCTATCTTGATCCAGACTACTACGTGAACTTTCAGCTCACGGAGAAAAGTGACGTGTATAGCTTCGGTGTTGTTCTGTTAGAGCTACTCAGCTCTAAGAAGGCTCTTGATTTCAACAGAGAAGAGGATGACGTGAATTTGGTGGTTATGGTGAAGAAGGCCTTGAAGGAAGGGAAGTTGATGGAGAAAGTTGTTGATCCAATGCTCAAAATTGGAGCTAGTAAGTTGGAGTTGGAGAGCATGAAGGCTTTTGGGTCTCTTGCTGTTGGGTGCTTGGATGATATAAGGGACAATAGGCCTTCAATGAAAGATGTTGCTAATGAGATTGACTACATTATGTGTATTGTTGCTGATGCTAAGGTTATGGGGTATTAA 1938 0.4659 MKIIDQHFPQFLTTIIILITQSVNALRNCGDCGHIKVPYPLSTSPNCGDQSYKIRCNSGTLWFDTINGSSYIITSINPTFQRLVIQPPGLANNTCMSRDFKNEGMWLDTNSPFNITSSNTLILMNCSQEILTMLFNCSSTSICHKYIREGNPVISRDCGATSRASKLCCHIKTGGSATAYRIRVRDDRCAAYASFPNLDPSLPVSMWRPGVEIEWQLPAEPPCKVAGDCLDLANSGCLPDPAGGGGGKCLCNAGFRWDPVNGKCQDTKCQHGRGCKLRKKSPLIGGLILAGTIMAAGAIFTAMGYYFQRKRMKREIQKRITSKANMILNSDNNNGRSAKVFTIKEITKATNNFSKSNLLGAGGFGEVFKGILDDGTITAIKRAKHGNIRGIDQILNEVKILCQVNHRSLVRLLGCCVELPNEPVLVYEYVSNGTLFDHLHNKNSSKWIRLGWHSRLRIAHQTAEGLAYLHDAAIPKIYHRDIKSSNILLDEKLDAKVSDFGLSKLAASEASHITTCAQGTLGYLDPDYYVNFQLTEKSDVYSFGVVLLELLSSKKALDFNREEDDVNLVVMVKKALKEGKLMEKVVDPMLKIGASKLELESMKAFGSLAVGCLDDIRDNRPSMKDVANEIDYIMCIVADAKVMGY 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc32006g00001 645 SMART serkin_6 353 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32006g00001 645 CDD STKc_IRAK 359 631 - -
Stsc32006g00001 645 SUPERFAMILY Protein kinase-like (PK-like) 336 634 IPR011009 -
Stsc32006g00001 645 ProSiteProfiles Protein kinase domain profile. 353 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32006g00001 645 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 325 429 - -
Stsc32006g00001 645 ProSitePatterns Protein kinases ATP-binding region signature. 359 381 IPR017441 GO:0005524
Stsc32006g00001 645 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 24 630 IPR044652 GO:0004672
Stsc32006g00001 645 Gene3D Transferase(Phosphotransferase) domain 1 430 637 - -
Stsc32006g00001 645 FunFam Wall-associated receptor kinase-like 20 430 642 - -
Stsc32006g00001 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 477 489 IPR008271 GO:0004672|GO:0006468
Stsc32006g00001 645 Pfam Protein kinase domain 354 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc32006g00001 645 Gene3D Phosphorylase Kinase; domain 1 325 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc32006g00001 Stsc-Chr32006 1904 7899 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc32006g00001 29 639 Receptor kinase-like Gene Family AT5G02070 53.612 0.0 650
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc32006g00001 Pkinase 2.6e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc32006g00001 - - gmx:100775709 903.664