Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31g00015 ATGGAAAACTTCTACTATTCTGGATGGCCTCAATGCAGCACCAACTCTGCACAAAACAGTAACAATAATTCTTCTCCCTTTTCAGTACCAACAACACAGATAGTGCCTCATCATCATGCTTATGACTCAGCCTTTGCCTCTCTTCAGTTCCAATATCCATGGCCTTTACCCTTTGAAGGCTTTCCAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGGATCAATGCACAGCTTGCTACTCTTAGAAAACTCATTCCTAAGTCTGATAAGATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGACCAAGTGAAGGATCTAAAGAGAAAAGCAATGGATGTGAGCAAAAGCATCACAGTTCCAAGTGAAACAGATGAAGTAACAATTGAGTGTGATCCTGATAATCAAGATGATCAAAGCTATGCTAAAGTGAAGATACTGAAGCACAACAACATAGTAATCTCAGTTTGCTGTGATGATAGACCAGAGCTGTTCAGTGAACTCAAAGGGTTGAGGCTCACAGCAGTTAAAGCTGACATAGCAAGTGTTGGTGGAAGAATCAAGAGCATATTGGTGCTATGCTCTAAGGAAAATAATGAACAAGGTGGTGGTGGTGTTTGCCTCACCACTCTCAAACAATCACTCAAATCTGCTGTCAACAAAATTGCTTCATCATCTGTGACATCAACTTGTCCCACAAGAAGCAAGAGGCAAAGGTTCTTCTTGCCTTCACATTGCATACAGTGA 777 0.4183 MENFYYSGWPQCSTNSAQNSNNNSSPFSVPTTQIVPHHHAYDSAFASLQFQYPWPLPFEGFPEDRAASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDQVKDLKRKAMDVSKSITVPSETDEVTIECDPDNQDDQSYAKVKILKHNNIVISVCCDDRPELFSELKGLRLTAVKADIASVGGRIKSILVLCSKENNEQGGGGVCLTTLKQSLKSAVNKIASSSVTSTCPTRSKRQRFFLPSHCIQ 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31g00015 258 PANTHER TRANSCRIPTION FACTOR BHLH30 46 254 IPR045847 GO:0003700|GO:0006355
Stsc31g00015 258 CDD bHLH_AtAIG1_like 63 139 - -
Stsc31g00015 258 Gene3D - 63 126 IPR036638 GO:0046983
Stsc31g00015 258 Pfam Helix-loop-helix DNA-binding domain 71 117 IPR011598 GO:0046983
Stsc31g00015 258 SMART finulus 74 123 IPR011598 GO:0046983
Stsc31g00015 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 68 117 IPR011598 GO:0046983
Stsc31g00015 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 121 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31g00015 Stsc-Chr31 146549 148449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31g00015 60 255 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 45.238 1.04e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc31g00015 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31g00015 - - gmx:100799687 322.398