Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31g00014 ATGCCTCACACCACTTATTCGTTGGAAATCACTCCCAATGAAAACCCAGCCGTGCCACCAGAACTTTCTTTCGGTGATTCCTATTCCATCAATCTCAGTTGCACCGTAGAGTTCATCCGAGTTAGCGTTGGCATTTCTTATACAATTGAATTGAATGAAGCGTTCTTGGTTCCTTCCGATGTCCTACGTAACTGTACTCCACTCACAGATATCAATGGGGAAAACATGGAACTGCCTATATCCTATGATTTATTGGACGAAATTTTAGCTCAGTTGGCTGAAAGCGCAGGTGACTCGTCCGAGATGGACGTGAACCTTCATGTTTTCATGCACTTTGCTGAAGAAGATTTAGATTTCTATAACAGTAATGGTGATTGTCAATATGTTTCTGCGGCACGCGAACTCGTGAGTCTGTTGGAGAGAGTCAAAGTTGACGAGGAAGAAGAAGATGGTGTTGATGAACAATGCGCTATTTGCTTGGAAGAGTTATTTGGAGATGGTAATGAAGATTCGCGTGGTGGAGAAGTTGTTCGCACAAATTGCTCGCATGTTTTCCATGAACGCTGTATATTACGTTGGATCGAGCGTTGCATCAAAAGTGAATCGCCCTATTCTTGTCCATTGTGCCGCTGCAACAACATATTCCCAACTTCAGAGGAAGATGAATAG 669 0.432 MPHTTYSLEITPNENPAVPPELSFGDSYSINLSCTVEFIRVSVGISYTIELNEAFLVPSDVLRNCTPLTDINGENMELPISYDLLDEILAQLAESAGDSSEMDVNLHVFMHFAEEDLDFYNSNGDCQYVSAARELVSLLERVKVDEEEEDGVDEQCAICLEELFGDGNEDSRGGEVVRTNCSHVFHERCILRWIERCIKSESPYSCPLCRCNNIFPTSEEDE 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31g00014 222 Pfam Ring finger domain 155 210 IPR001841 -
Stsc31g00014 222 CDD RING-H2 156 210 - -
Stsc31g00014 222 SUPERFAMILY RING/U-box 147 216 - -
Stsc31g00014 222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 214 IPR013083 -
Stsc31g00014 222 ProSiteProfiles Zinc finger RING-type profile. 156 210 IPR001841 -
Stsc31g00014 222 PANTHER RING ZINC FINGER PROTEIN-RELATED 129 217 - -
Stsc31g00014 222 SMART ring_2 156 209 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31g00014 Stsc-Chr31 144651 145343 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31g00014 138 210 C3H Transcription Factor Family AT4G12190 37.838 4.12e-09 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31g00014 - K16285 adu:110273516 198.364