Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31g00011 ATGATGATTGAAGACAACGCCAAATTCGACGACGCAGATCGAATCAAGGGTTCTTGGAGCCCCCAAGAAGATGCAACGCTTTTGAAGCTCGTTAAGCAGCACGGAGCACGGAACTGGTCCACCATTAGCAGCGGGATACCGGGCCGATCGGGAAAGTCTTGCCGTCTGCGGTGGTGCAACCAGCTCAGCCCCGATGTTCAGCACCGGCCGTTCACCCCCGCCGAGGACGAAGTCATCCTTAACGCGCACGCCGTACACGGCAACAAGTGGGCCACCATTTCAAGACTCCTTCCTGGCCGAACCGATAACGCTATCAAGAATCACTGGAACTCCACGCTCCGCCGCCGTAAAGGTGCCACAGGTGGAGTATCCTCCGCCACCACATCGTCGTCTTCGGAACTCAGCCCGACGCTTCTTTGCCAAAAGCGCAAGGCCGAGCCGTTAGAGTTGCCACGGAATCTTGTTAACAAGAGGCCGTGTTTGCCGGCGGTTTCGGTCACAGAAAACGAGGCTCGCCGTCACGCGGAGGAGGAGGTTTTTGTTTGCCAAAAGCGCAAGGCCGAACCGTTAGAGCGACCAAAGAATTTCAACAAGAAGCCGTGTTTGCAGGCCTCTGCATATACAGAGGAGGAGGAAGGAGAGGGAAGAGAAGGCGTTACTACCTTGAGTTTGCTTCCGCCCGGGGAGAAGCCTTTGGCGGCGGAGAGAGTGTGGCGGAAGGAAGAGGAAGTGAATGGAGACGATGGATATGCATGGTTGGTGAAGATGATGCAGCGCATGATAGCAGAGGAGGTTAGGAAATACATTCAAAGCTTACAACATAAGACTCCACCACCACCCTTTGACTTTGATCCATCTAGTAAACATTTTTAG 873 0.5418 MMIEDNAKFDDADRIKGSWSPQEDATLLKLVKQHGARNWSTISSGIPGRSGKSCRLRWCNQLSPDVQHRPFTPAEDEVILNAHAVHGNKWATISRLLPGRTDNAIKNHWNSTLRRRKGATGGVSSATTSSSSELSPTLLCQKRKAEPLELPRNLVNKRPCLPAVSVTENEARRHAEEEVFVCQKRKAEPLERPKNFNKKPCLQASAYTEEEEGEGREGVTTLSLLPPGEKPLAAERVWRKEEEVNGDDGYAWLVKMMQRMIAEEVRKYIQSLQHKTPPPPFDFDPSSKHF 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31g00011 290 Pfam Myb-like DNA-binding domain 16 62 IPR001005 -
Stsc31g00011 290 Pfam Myb-like DNA-binding domain 70 112 IPR001005 -
Stsc31g00011 290 Gene3D - 70 116 - -
Stsc31g00011 290 SMART sant 15 64 IPR001005 -
Stsc31g00011 290 SMART sant 67 115 IPR001005 -
Stsc31g00011 290 MobiDBLite consensus disorder prediction 117 135 - -
Stsc31g00011 290 PANTHER MYB PROTEIN-RELATED 16 142 - -
Stsc31g00011 290 MobiDBLite consensus disorder prediction 115 135 - -
Stsc31g00011 290 ProSiteProfiles Myb-like domain profile. 11 62 IPR001005 -
Stsc31g00011 290 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc31g00011 290 CDD SANT 18 60 IPR001005 -
Stsc31g00011 290 FunFam MYB transcription factor 16 67 - -
Stsc31g00011 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Stsc31g00011 290 Gene3D - 15 67 - -
Stsc31g00011 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Stsc31g00011 290 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Stsc31g00011 290 CDD SANT 70 113 IPR001005 -
Stsc31g00011 290 FunFam Transcription factor MYB44 70 116 - -
Stsc31g00011 290 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31g00011 Stsc-Chr31 129036 129974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31g00011 12 133 MYB Transcription Factor Family AT3G50060 64.754 1.20e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc31g00011 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31g00011 - - adu:107457624 347.436