Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31g00009 ATGGCGCACACCTCTTATTCGTTGGAAATCGCTTCCCGTGAAAACCCAACCGCCCCACCAGAATGTTGTTTCAGTGATTGTTTTTCCATCAATCTCACTTTTACCATAGAGTTTATCCAAGTTGATATTGACCTTTCTTCTTCAACTACATTCAGGGAAGCATTCTTGGTTCCTTGGGATATCCTATGTAACTGTACTCCACTCACAGATTTCAATGGCCAGAACGCCGAAATTTTACATGACATCTTCTCTTCAGTGCACATATCCTATGAGTTATTGGACGAAATTTTACCTCACTTGGCTGAAAGCGCAAGAACGATTCTAAGTGGTGAACGGTGTGGCTCGTTGGAGATGGATGTGAACCTTCATGTTGTTATGCACATTGCTGATGAAGATTTCGAGATCTTTAATGATGATGAACACCGTGAAAATGTTTCTGAAGTAGGCCAAGTTGTGACTCTAATGGAGAGACTCAAAGTTGATGTGGAAGAAGATGGTGATGAACAATGCGCTATTTGCTTGGAAGAGTTATTTGGAGATGGTAATGAAGATTCAAGTGGAGAAGTTGTTGTTCGCACAAATTGCTCGCATGTTTTCCATGAACGCTGTATATTGCGTTGGATCGAGCGTTGTATCAAATGTGAATCGCCCTATTCTTGTCCATTGTGCCGCTGCAACATGATTCCAAATTCAGAGGGAGATGATGAATAA 711 0.4149 MAHTSYSLEIASRENPTAPPECCFSDCFSINLTFTIEFIQVDIDLSSSTTFREAFLVPWDILCNCTPLTDFNGQNAEILHDIFSSVHISYELLDEILPHLAESARTILSGERCGSLEMDVNLHVVMHIADEDFEIFNDDEHRENVSEVGQVVTLMERLKVDVEEDGDEQCAICLEELFGDGNEDSSGEVVVRTNCSHVFHERCILRWIERCIKCESPYSCPLCRCNMIPNSEGDDE 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31g00009 236 ProSiteProfiles Zinc finger RING-type profile. 170 224 IPR001841 -
Stsc31g00009 236 PANTHER RING ZINC FINGER PROTEIN-RELATED 150 231 - -
Stsc31g00009 236 SUPERFAMILY RING/U-box 156 229 - -
Stsc31g00009 236 CDD RING-H2 170 224 - -
Stsc31g00009 236 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 230 IPR013083 -
Stsc31g00009 236 SMART ring_2 170 223 IPR001841 -
Stsc31g00009 236 Pfam Ring finger domain 169 224 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31g00009 Stsc-Chr31 124251 124961 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31g00009 168 230 C3H Transcription Factor Family AT4G00305 38.095 3.38e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31g00009 - - adu:110273516 256.529