Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31g00008 ATGGCACACTCCTCTTATTTGTTGGAAATCACTTCCAGTGAACACCCAACCGTGCCACTAGATTTCTGTTTCAGTGATTGCTTTTCCATCAACCTCTTTTGCATCATAGATTTGATCCAACTTATCCAACCCACAAACCCAGCCGCTGATATTTACTCTTCTTCTTCAACTACATTCAATGAATCGTTCTTGGTTCCTTCTGATATCTTGTGTAACTGCAACACCGAAATTTTACATCAAATCTTCTCTGCAGTGCCCGTATCCTCTGAGTTATTGGACGAAATTTTACCTCGGCTGGCTGAAAACGCAAGAACGATTCTAAGCCGTGAACGATGTGGCTCGCTGGAGATGGATGTGAACCTTCATGTTCTGACGCACATTGATGATGATGATGAAGAATTTGAGGTCTATAATGATGATGATGATCACCATCAAAATGTTTCTGATGAACTAGGCCAACTCGTTAATCTGTTGGAGAGACCCAACAAAGTTGATGGTGTTGAACAATGCGCTATTTGCTTGGAAGAGTTATTTGGAGATGGTAATGAAGATTCAAATGGAGAAGTTGTTGTTCGCACAAATTGCTCGCATGTTTTCCATGAAGGCTGTATATTCCGTTGGCTCGAGCGTTGTATCAAATGTGAATCGCCCTATTCTTGTCCATTGTGCCGCTGCAACATGTTTCAAAGAAGATGA 696 0.4152 MAHSSYLLEITSSEHPTVPLDFCFSDCFSINLFCIIDLIQLIQPTNPAADIYSSSSTTFNESFLVPSDILCNCNTEILHQIFSAVPVSSELLDEILPRLAENARTILSRERCGSLEMDVNLHVLTHIDDDDEEFEVYNDDDDHHQNVSDELGQLVNLLERPNKVDGVEQCAICLEELFGDGNEDSNGEVVVRTNCSHVFHEGCIFRWLERCIKCESPYSCPLCRCNMFQRR 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31g00008 231 SUPERFAMILY RING/U-box 169 229 - -
Stsc31g00008 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 229 IPR013083 -
Stsc31g00008 231 CDD RING-H2 170 224 - -
Stsc31g00008 231 ProSiteProfiles Zinc finger RING-type profile. 170 224 IPR001841 -
Stsc31g00008 231 SMART ring_2 170 223 IPR001841 -
Stsc31g00008 231 Pfam Ring finger domain 169 224 IPR001841 -
Stsc31g00008 231 PANTHER RING ZINC FINGER PROTEIN-RELATED 132 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31g00008 Stsc-Chr31 121204 121899 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31g00008 167 228 C3H Transcription Factor Family AT4G12190 41.270 8.46e-09 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31g00008 - - adu:110273516 235.728