Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31g00004 ATGAAAGGTTACGAGCCACGATCAAGTTCATCTTGTGCAGCCTGCAAATTCTTGAAGAGAAGGTGCATACCAAACTGCATATTCGCCCCTTACTTCCGCTCCGACGAGTGCAAGAAATTCGCCAAAGTTCACAAAGTCTTTGGAGCCAGCAATGTTAGCAAGATCCTCGTCGAGGTCCCGGAGGAGCAGAGGGAGGACACCGTGAACTCCCTCGCCTACGAGGCCGAGGCCCGCCTTAGGGACCCCGTGTACGGCTGCATTGGTGCCATAGCGCTCTTGCAGAGGAAAATGGTTGAGCTTCAGCATGATCTCGCCATCGCCAAGGATCGTCTTGCTCGCTATTCTGCTTCTGCTGCTGCTGCTACTACAACCACCGATGCTACTTCCATTATAACTTCTTCTTCTTCTTGCTCTGATATGTTTAATATCAATAATTCTCAAGTTAGCTTGCCACCTTTCCCAACTTCTTGCAGTGATTTCAATGACAGTGGCGGCTTCTGCAGCCACAGCTCTTCTTCGTCTCAGTCATTTATTACTACCCGGCATGAGACCACGGTCGACGATTTCATTCAAATTCCATATATATTTTAG 591 0.4873 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILVEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARYSASAAAATTTTDATSIITSSSSCSDMFNINNSQVSLPPFPTSCSDFNDSGGFCSHSSSSSQSFITTRHETTVDDFIQIPYIF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31g00004 196 Coils Coil 90 110 - -
Stsc31g00004 196 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Stsc31g00004 196 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Stsc31g00004 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31g00004 Stsc-Chr31 22259 22849 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31g00004 1 126 AS2 family AT3G11090 72.222 8.13e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Stsc31g00004 LOB 6.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31g00004 - - aip:107608172 297.36