Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc319g00003 ATGATTTTGGACCAAAAGCTTTGCCCTTTCGTGCTTTGCAATAATTTTGCACTGATGGGTACCTCGAATCTTCTCCTCTTTCTCTTCTCTCTTTTGGGTTTGTGTGCTTTGTCAGCTGCCAAAGTGGTGCTGATTGGGAACAACATCACTCTCTCCTTCGATGATATTGAAGCTAATTTCGCTCCGACGATCAAAGGGTCTGGAGAATGTGGATTCTTATATTTGGCAGAGCCGCTCGATGCTTGCTCCGACCTGATGAACCCAGCTCCACAACTTCCGAATGCGAGTTTGCCTTTTGTTTTGATGATTAGGGGAGGATGCAGCTTTGAGGAAAAGGTCAGAAGAGCACAAGCAGCTGGCTACAAAGCTGCAATTGTCTATGATGACGAGGATAGTGGTGTCTTGGTTGCAATGGCAGGAAATTCAGCTGGTATAAGAATACATGCTGTATTTGTATCAAAAGCTTCAGGTGAATTGCTAAAGGAATACACTGGAAGGACTGATGTGGAGATATGGCTTATTCCAAGTTTTGAGAACTCAGCATGGTCAATCATGGCAATTTCATTTATTTCCCTACTAGCCATGTCTGCGGTGCTTGCAACCTGTTTCTTTGTTCGTAGGCATCGCATAAGAAGGGAGAGGCCTCAAGCTTCTCGTGTTCGTGAATTTCATGGTATGAGTAGTCGCCTAGTGAAAGCAATGCCTAGTTTGATATTTACTGCAGTCTTAGAAGACAACTGTACCTCAAGAACATGTGCCATATGCCTTGAAGATTATTGTGTTGGAGAGAAGCTAAGGATACTGCCTTGTTGTCACAAGTTTCATGCTATGTGCGTGGATTCTTGGCTTACCTCATGGAGGACATTTTGTCCAGTTTGTAAGCGTGATGCAAGAACTGGTTTAAGCGAGCCTCCACCTTCAGAATCCACGCCCTTGCTTTCGGCGAGCCCAGCATCTGTAGCATCCTCTGTCCTATCTTCTACAAGGTCATCATTAGCGTCATCCCCAGCTATTCAAATTGCTCGTCCGCCTTCACATGCCTCATCCGTTTCTCGAAACCACTCCTTAGCTAGCACCCCTTATGTTCAGCCGTCTTATAGGTCCTACCGACAATCCCCATCACTAAGCATCAGTCGAAGTTCCTTAGACCTTAGGAACGGATCCCAAAGATCTCTAGCTTCTCACCTGAATTCAGCACATTCCATGGGCTACCCATCCTTGTCTTCTGTTAACTCAAGGTTCATGTCTCCATATGTTCCAAGTCCAAGCAATGCTTCTGTAAGTATTCTCGGTTCCTCAAGTCACCGACAGCATCCACTCCGATACAGTGAGTCAGCTGCGAGTTTCTCACCATTTGCATCTGCAAACTCCCTCCCAGAGTGCTAA 1386 0.4567 MILDQKLCPFVLCNNFALMGTSNLLLFLFSLLGLCALSAAKVVLIGNNITLSFDDIEANFAPTIKGSGECGFLYLAEPLDACSDLMNPAPQLPNASLPFVLMIRGGCSFEEKVRRAQAAGYKAAIVYDDEDSGVLVAMAGNSAGIRIHAVFVSKASGELLKEYTGRTDVEIWLIPSFENSAWSIMAISFISLLAMSAVLATCFFVRRHRIRRERPQASRVREFHGMSSRLVKAMPSLIFTAVLEDNCTSRTCAICLEDYCVGEKLRILPCCHKFHAMCVDSWLTSWRTFCPVCKRDARTGLSEPPPSESTPLLSASPASVASSVLSSTRSSLASSPAIQIARPPSHASSVSRNHSLASTPYVQPSYRSYRQSPSLSISRSSLDLRNGSQRSLASHLNSAHSMGYPSLSSVNSRFMSPYVPSPSNASVSILGSSSHRQHPLRYSESAASFSPFASANSLPEC 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc319g00003 461 SMART ring_2 252 293 IPR001841 -
Stsc319g00003 461 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 40 174 - -
Stsc319g00003 461 Gene3D - 41 174 - -
Stsc319g00003 461 PANTHER RING ZINC FINGER DOMAIN SUPERFAMILY PROTEIN-RELATED 176 309 - -
Stsc319g00003 461 Pfam Ring finger domain 251 294 IPR001841 -
Stsc319g00003 461 SUPERFAMILY RING/U-box 242 305 - -
Stsc319g00003 461 CDD PA_C_RZF_like 35 181 IPR044744 -
Stsc319g00003 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 299 IPR013083 -
Stsc319g00003 461 ProSiteProfiles Zinc finger RING-type profile. 252 294 IPR001841 -
Stsc319g00003 461 Pfam PA domain 100 160 IPR003137 -
Stsc319g00003 461 SUPERFAMILY PA domain 100 169 IPR046450 -
Stsc319g00003 461 MobiDBLite consensus disorder prediction 336 356 - -
Stsc319g00003 461 FunFam Receptor homology region transmembrane domain-and RING domain-containing protein 2 212 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc319g00003 Stsc-Chr319 32661 37440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc319g00003 37 460 C3H Transcription Factor Family AT1G22670 47.696 3.76e-120 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc319g00003 K15692 - gmx:100791248 649.432