Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc319g00001 ATGTCTACAACGACACAAAAGGCAGCGTTTGGTGGCGTAGAAACTCCCAATGGAGACTCACCCAACTCAACCGCTCCACCCAAACACCCCCCTCGAGAATCCCGTGACATTCATCCTTTCATGTCCCCTTCTTACCCAATCACTCTCAAGTTCATGGACGTGGGATACCGGATAAAGATAGAGAACAAGCAAGGGAAAGGAAACTGCATTAAGAAACTTTTCGCAACTGATCGCGAGTCACCAACACCGTCCGATCCAAGAAGATCAACGGTGCTGCAAGAGCGAACAATACTAAACGGAGTAACAGGAATAGCGTACCCGGGAGAGATCCTAGCCATCCTTGGTCCATCAGGAAGCGGCAAATCAACGCTCCTAAACACTCTTGCAGGGAGACTCCATGGTCACGGCCTCACCGGAACAATTCTCGCAAACTCATCCAAGCTCACAAAACCGATTCTCCGACGAACCGGATTCGTCACTCAGGACGACGTTCTCTACCCGCACCTCACCGTCCGCGAAACCCTAGTCTTCTGCTCCATGCTCCGCCTCCCTCGCACGCTGCCGCGGGAGGCGAAGATCGCGGCGGCGGAGTCAGCGATCGCGGAGCTTGGACTAGGCAAGTGCGAAGACACAATCATTGGAAACAGCTTCATCCGCGGCGTCTCCGGCGGCGAGAGGAAGCGCGTGAGCATCGCGCATGAGATGCTGGTGGATCCGAGCCTGCTGCTTCTGGACGAGCCGACGTCAGGGCTGGACTCCACGTCGGCGCACCGCCTCATTACGGTGCTCGGTTCGCTGGCGAAGAAGGGGAAGACAGTGGTGACGTCGGTGCACCAGCCGTCGAGCCGCGTGTTCCAGATGTTCGATAAGGTGCTGGTGCTCTCCGAAGGGAACTGCCTCTACTTCGGCAAAGGATGCGAAGCCATGCGGTACTTCGAGTCGGTTGGTTTCGTGCCATCTTTTCCGATGAACCCCGCCGATTTTCTTCTCGATCTCGCTAACGGTGTTAGCCATATTGATGGTGTAAGTGAAAGAGATAAGCCAANNNNNNNNNNCGGCAGAACCTAA 1068 0.5487 MSTTTQKAAFGGVETPNGDSPNSTAPPKHPPRESRDIHPFMSPSYPITLKFMDVGYRIKIENKQGKGNCIKKLFATDRESPTPSDPRRSTVLQERTILNGVTGIAYPGEILAILGPSGSGKSTLLNTLAGRLHGHGLTGTILANSSKLTKPILRRTGFVTQDDVLYPHLTVRETLVFCSMLRLPRTLPREAKIAAAESAIAELGLGKCEDTIIGNSFIRGVSGGERKRVSIAHEMLVDPSLLLLDEPTSGLDSTSAHRLITVLGSLAKKGKTVVTSVHQPSSRVFQMFDKVLVLSEGNCLYFGKGCEAMRYFESVGFVPSFPMNPADFLLDLANGVSHIDGVSERDKPXXXXGRT 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc319g00001 355 Pfam ABC-2 type transporter 278 341 IPR043926 GO:0140359
Stsc319g00001 355 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 315 IPR027417 -
Stsc319g00001 355 FunFam ABC transporter G family member 22 86 315 - -
Stsc319g00001 355 Pfam ABC transporter 99 249 IPR003439 GO:0005524
Stsc319g00001 355 MobiDBLite consensus disorder prediction 1 22 - -
Stsc319g00001 355 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 30 336 - -
Stsc319g00001 355 Gene3D - 88 315 IPR027417 -
Stsc319g00001 355 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 49 321 IPR003439 GO:0005524
Stsc319g00001 355 MobiDBLite consensus disorder prediction 1 41 - -
Stsc319g00001 355 SMART AAA_5 107 298 IPR003593 GO:0016887
Stsc319g00001 355 CDD ABCG_EPDR 95 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc319g00001 Stsc-Chr319 9980 16808 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc319g00001 97 303 Calmodulin-binding Proteins AT2G36910 31.280 1.58e-13 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc319g00001 K05681 - gmx:100812127 543.502