Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31960g00001 ATGGCAGACGCAACAGCCGTATACGATTTCCTCAACCAAACTGCTGATTCTTCTTCTAAAGAATCATCACCTCCTTCTTCTTCTTCAAAGAAATCACAACAACTAATAACTCAACCCTTTCATCATCAACAACAACAACAACCACCTTCTAGAACATTCCAATGTCATTTCTGTAACCGCAAGTTCTACACTTCTCAGGCACTCGGCGGCCACCAGAACGCTCACAAGCTCGAACGAGCTGCCGCCCGAAGAACCGCCCTCACCATCCCTCTCCAGCACCCACCGCCGCCTCCGCCTCCTCACTCGCTCTTTCCGTCAATGGAGTCCTCTCCTCCTTTCTTTCTCAGGAACAGCAACGATCTCAACACCACCAACAAGGCCGCCATGGTTGCCGCCGCTGCCATGGAAGCAGCTGATTATCATGGCGGTGGCGGTGGTGGACGTTTCTTTGGAAACCCTTACTGGCTAGAAATGGATCCGCAGCAGTTTCAGCAGATGAATCATCATCATCATCATGCTGCTTCTTCGGTGGGATTCTTCCATGGCGGTGGTGAAGGTGGTTCTTCAGGGTCTTCATCTTCCACTTCAACTCATCATCATCATCAGCAGCAGCAGTATCAGTATCATCATGGATCTGGCTCTGCTGCTCCAGCTCCGGCGTCTTCTTCCGATGCTTCTGATAAC 684 0.5073 MADATAVYDFLNQTADSSSKESSPPSSSSKKSQQLITQPFHHQQQQQPPSRTFQCHFCNRKFYTSQALGGHQNAHKLERAAARRTALTIPLQHPPPPPPPHSLFPSMESSPPFFLRNSNDLNTTNKAAMVAAAAMEAADYHGGGGGGRFFGNPYWLEMDPQQFQQMNHHHHHAASSVGFFHGGGEGGSSGSSSSTSTHHHHQQQQYQYHHGSGSAAPAPASSSDASDN 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31960g00001 228 MobiDBLite consensus disorder prediction 10 50 - -
Stsc31960g00001 228 MobiDBLite consensus disorder prediction 186 228 - -
Stsc31960g00001 228 SUPERFAMILY beta-beta-alpha zinc fingers 50 80 IPR036236 -
Stsc31960g00001 228 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Stsc31960g00001 228 PANTHER ZINC FINGER PROTEIN JAGGED 16 195 IPR045320 GO:0003700
Stsc31960g00001 228 MobiDBLite consensus disorder prediction 1 50 - -
Stsc31960g00001 228 Gene3D Classic Zinc Finger 25 90 - -
Stsc31960g00001 228 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Stsc31960g00001 228 MobiDBLite consensus disorder prediction 165 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31960g00001 Stsc-Chr31960 1586 2269 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31960g00001 51 84 C2H2 Transcription Factor Family AT5G14010 82.353 2.94e-13 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31960g00001 - - ahf:112759108 198.749