Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31949g00001 ATGGGAAGAGCTCCTTGTTGTTCAAAAGTTGGCTTGCATAGAGGTCCATGGACTCCAAGAGAAGATACACTTCTCACTAAGTATATTCAAGCTCATGGAGAAGGCCAATGGAAATCACTACCAAAAAAAGCTGGACTTCTAAGATGTGGAAAAAGTTGTAGACTTAGATGGATGAATTATTTGAGACCGGATATTAAGCGTGGAAACATAACACCTGAAGAAGATGATCTTATAATAAGAATGCATTCTCTTTTAGGAAACAAATGGTCTCTAATAGCCGGAAGATTACCCGGAAGAACCGACAACGAGATCAAAAATTATTGGAACACGCATCTAGGCAAGAAGGTGAAGAATCAAGGATCATCGGATTCGAAAGAAGAAGAAGGAGGAAGAGGAACTGCGCCCACGGCCGCAAAGAAGAAGAACAATGATGGTGGGAAAAGGAAGAGCAAGAACAATAGCAATAAGAGAGACAAAAACAACAAGAAATCAAAAGGGTCAAAGGAAGAAGAATCAACAAAGACACAAGTTTATTTACCAAAACCTATTAGGGTCAAGCCATCAAGTTTGGCTAGATCAAATAGCACCTCCTTCACTCTTGATTCCAACAATTCAGCAACAACAACTAGCCAAGAGAAAGAAGAAGAAAATAATAACAATAACATAACAAAACTATGGGAGGAGACAAATAATAAGGAGGTGATGTTTTGTGATGAATTTGGTGGGTACAAGAATAATATTAATAATGTGGATGAAAATGATGGTTTTGGATTCTATTTTGGTGGCCCTCATGAAGACTTAGTCATCAACAGTAATAATTCAGATATGGAATGTCAATCCTATGATTATTATGGAAAAGAGGATCTTAATCATCATGGCACATTAGAGAAGCTATATGAGGAGTATTTGCAGGTCTTGAATATGGAAGATAACATGTATGAGTTAGATTCTTTTGCTGAATCTCTAATGGTGTAA 975 0.3713 MGRAPCCSKVGLHRGPWTPREDTLLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHLGKKVKNQGSSDSKEEEGGRGTAPTAAKKKNNDGGKRKSKNNSNKRDKNNKKSKGSKEEESTKTQVYLPKPIRVKPSSLARSNSTSFTLDSNNSATTTSQEKEEENNNNNITKLWEETNNKEVMFCDEFGGYKNNINNVDENDGFGFYFGGPHEDLVINSNNSDMECQSYDYYGKEDLNHHGTLEKLYEEYLQVLNMEDNMYELDSFAESLMV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31949g00001 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Stsc31949g00001 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Stsc31949g00001 324 MobiDBLite consensus disorder prediction 188 218 - -
Stsc31949g00001 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Stsc31949g00001 324 CDD SANT 16 61 IPR001005 -
Stsc31949g00001 324 MobiDBLite consensus disorder prediction 118 134 - -
Stsc31949g00001 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc31949g00001 324 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Stsc31949g00001 324 Gene3D - 14 66 - -
Stsc31949g00001 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc31949g00001 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Stsc31949g00001 324 Gene3D - 69 129 - -
Stsc31949g00001 324 MobiDBLite consensus disorder prediction 141 175 - -
Stsc31949g00001 324 FunFam Myb transcription factor 11 67 - -
Stsc31949g00001 324 CDD SANT 71 112 IPR001005 -
Stsc31949g00001 324 SMART sant 13 63 IPR001005 -
Stsc31949g00001 324 SMART sant 66 114 IPR001005 -
Stsc31949g00001 324 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 226 - -
Stsc31949g00001 324 MobiDBLite consensus disorder prediction 114 218 - -
Stsc31949g00001 324 FunFam MYB transcription factor 68 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31949g00001 Stsc-Chr31949 9023 10731 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31949g00001 1 120 MYB Transcription Factor Family AT4G38620 74.167 6.36e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc31949g00001 Myb_DNA-binding 1.2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31949g00001 K09422 - gmx:100101857 335.88