Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3189g00002 ATGGCGGAAGGTAGCGGAGACAACAAGAAGAGACTTCTCATTATTAGCATCTCCATGGTCCTTCTCGTGGGCGTGATCGGCTCGGTTGCGATCGGCGTAAGCAGCCACCCAACCGGCAAATCCGCTGACTGCGTTGATGACCACGAAGAAGACCCCCACGTGGCAAAATACCAAAAGAACGTAGAAATGATTTGCGGATCCACAGAATACAAAGACACATGCAAAGACAGTCTCTCAGATGCTTCAAACAAAACCTCAGACATGAAAGAACTCATCAAAGCTGCATTCAACTACACAACAATTGAAATATCCAGCCACATTCAAAACTCATCTCTTTACAAAGAGTTAGGGAAGGACAACATGACGAGACAAGCTTTAGACATATGCAAGGAAGTTCTTGGTTATGCAGTTGATGATCTTCACAAATCTATTGAAAAGATTGACAAATTTGAGCTGAGCAAGATCAATGAATATGCATATGATATCAAGGTTTGGGTTGCTGGCACCATAACCCACCAACAAACATGCTTGACCGGGTTCGAAAACACGACGACCGAAGCCGGTTCGACCATGGAAAACGTGCTCAAAACTTCTCTAGAGCTTAGTAGCAATGCTTTGGACATGATCAATGGTGTGAGCAAGGTCCTCGGGCAATTCGACTTTAGCGCCCTAGCAGGCGGCGGTGGCGGCGACGGCAATACTCACAGGAGGCTTCTGGAAGAAGAATCGTCCAATTTATTAAAAGATGGGATGCCTTCTTGGGTGAATGAAGGGCAAAGGAAGCTGATCAAGGCGGGTCCAGTGGGCGGAGTCGGAAGCATTGTGCCTAATGCAGTTGTGGCTAAGGATGGGAGTGGACAGTTTAAGACATTGACGGATGCTCTTAAATTGGTGCCAAAGAAGAACAAGACTCCATTCATAATTTATGTTAAGGCTGGTGTGTACAAGGAATATGTGAATGTGATAAAGAAATGGATCGGTAGCAAGAATTATGTTGATGGTGTCCAAACTTATAACACTGCAACCTTCGTGTGA 1035 0.4531 MAEGSGDNKKRLLIISISMVLLVGVIGSVAIGVSSHPTGKSADCVDDHEEDPHVAKYQKNVEMICGSTEYKDTCKDSLSDASNKTSDMKELIKAAFNYTTIEISSHIQNSSLYKELGKDNMTRQALDICKEVLGYAVDDLHKSIEKIDKFELSKINEYAYDIKVWVAGTITHQQTCLTGFENTTTEAGSTMENVLKTSLELSSNALDMINGVSKVLGQFDFSALAGGGGGDGNTHRRLLEEESSNLLKDGMPSWVNEGQRKLIKAGPVGGVGSIVPNAVVAKDGSGQFKTLTDALKLVPKKNKTPFIIYVKAGVYKEYVNVIKKWIGSKNYVDGVQTYNTATFV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3189g00002 344 SMART PMEI_2 56 208 IPR006501 GO:0004857
Stsc3189g00002 344 Pfam Plant invertase/pectin methylesterase inhibitor 61 208 IPR006501 GO:0004857
Stsc3189g00002 344 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
Stsc3189g00002 344 NCBIfam pectinesterase inhibitor domain 55 211 IPR006501 GO:0004857
Stsc3189g00002 344 ProSitePatterns Pectinesterase signature 1. 302 321 IPR018040 -
Stsc3189g00002 344 SUPERFAMILY Pectin lyase-like 277 343 IPR011050 -
Stsc3189g00002 344 PANTHER PECTINESTERASE 15 343 - -
Stsc3189g00002 344 FunFam Pectinesterase 57 213 - -
Stsc3189g00002 344 Pfam Pectinesterase 277 325 IPR000070 GO:0030599|GO:0042545
Stsc3189g00002 344 CDD PMEI-like_3 64 214 - -
Stsc3189g00002 344 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 211 IPR035513 -
Stsc3189g00002 344 Gene3D - 232 343 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3189g00002 Stsc-Chr3189 480 2205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3189g00002 8 342 Carbohydrate Esterase AT3G05610 38.983 1.47e-76 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3189g00002 K01051 - gmx:100800194 328.561