Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc3189g00001 ATGGCGAAGAACATTGGATTCGAGAACACAGCAGGCCCAGAAAAGCACCAAGCAGTGGCACTCAGAATCACAGCAGACCAAGCCGTGATCTACAACTGCCACATGGAAGATTTCCATGACACACTCTACGTCCAATCCCAACACCAATTCTTCCGTGACTGCACCATCACAGGCACCATTGACTTCATCTTTGGGGACGCAGTTAGAGTCTTCCAAAACTACAAGCTCCTTGTCAAGAAGCCCATGTCTAACCAACAATGCATGGTCACAGCCGGTGGAAGAACCAAAGTTGACAGCCCAACTGCCCTTGTTTTCCAGAGCTGCTACTTCACTGGGGAGCCTCAACTTGCAAGCTTGATCCCCAAGATTGCTTACTTGGGTCGCCCATGGAGGACTTACTCCAAGGTGGTTATCATGGACTCCATCATTGATGATATCATTGTGCCTGAAGG 452 0.4934 MAKNIGFENTAGPEKHQAVALRITADQAVIYNCHMEDFHDTLYVQSQHQFFRDCTITGTIDFIFGDAVRVFQNYKLLVKKPMSNQQCMVTAGGRTKVDSPTALVFQSCYFTGEPQLASLIPKIAYLGRPWRTYSKVVIMDSIIDDIIVPEG 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc3189g00001 151 ProSitePatterns Pectinesterase signature 2. 56 65 IPR033131 -
Stsc3189g00001 151 SUPERFAMILY Pectin lyase-like 1 151 IPR011050 -
Stsc3189g00001 151 PANTHER PECTINESTERASE 1 151 - -
Stsc3189g00001 151 Gene3D - 1 151 IPR012334 -
Stsc3189g00001 151 Pfam Pectinesterase 1 151 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc3189g00001 Stsc-Chr3189 14 465 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc3189g00001 2 151 Carbohydrate Esterase AT5G49180 57.792 1.86e-61 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc3189g00001 K01051 - gmx:100800194 250.751