Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31880g00003 ATGATCCTTCGGATCTCCATCCATTACAATGAACCTCAACTATATATTATAATCACCATTATCTTCCTGTTCTCCCTGGCTACCGCTGTTGTATCTGTTAATCCAAAATTTTTGGCCTGCACACCTAGAAGCTGTGGAAATGATATAAACATTAAGTATCCATTCTGGATCCCTTATGAACAGGATTCATTTTGCGGCTATCCTCACTTTGAGATCACCTGCAAGGACAAGAATCCAATTCTCAGAACATCCAATTATGACTTACTAGTGAAAGATATCGATTACTCCAGCTCTTCATTTACTGCTGCTAATGTTGCTGTCTATGAGGAAAAGTGTCCTGCTCCCATGCACAATTACAGCTTTGATCAGTTACCATTTACTTATAGTTCTGAGAACTATAATCTCTCTTTCTTTTATAATTGTACCAAAAAGCCAATAGATTACCCTACTTATGAAGTAGATTGTGCTGAAAATGCTACTCATAATTCGTTTGCGGTTTTTCATAAGGAGGCGCTGGAGCACATAAACTACACTTTGAATGAGTGTCAGTTTATGGTTAATGTGCCACTGAACATGAATGCTGTTGTTAATTTCAGTAGCTTATTGCGAATGAATTACACTGAAATTTTGAAGATGGGGTTTATTTTAAACTGGACTGCACCTGATTGCCAATACTGTGAGAACAGTGGTGGACACTGTGGATTTGATGGTGATCATTTCCTCTGCTTCTGCAAGGATAAGTCTTACCTGAAAAGTTGTGGTCATGGAAAGCAACGGGGATGGAAGGTCGTTGGTATAGTTGCTGCTTCTGTGGTTGGAGTGCTAGTCCTTGCCATCGTGGCCTTTCTTTTCTATCGAAGGCAAAAGAAGACTAGTTATGGAATGTCTTATACACAGCCGCGGAGCATGTCTTCTGATCCATCATCTTGGAAAGACACCGAGAAGGGAAGTCAATACTTTGGAGCACACCTCTTTTCCTATACTGAACTTGAAGAGGCCACTAACTTCTTCGACCCATCCAGGGAACTAGGAGAAGGAGGTTTTGGGACAGTGTATTATGGACAACTGCCGGATGGACGTTGTATTGCAGTGAAGCGGTTGTATGAGAACAATTATAGGAGAGTAGAACAATTCATGAATGAAATTGAGATCCTAACTCGCCTACGCCACAAAAACCTTGTCTCACTATTTGGATGCACTTCTCGCCACAGCCGAGAACTTCTGCTTGTGTATGAGTATATTGCAAATGGAACTGTTGCTGATCATCTTCATGGAAACCGAGCCAAAGCTGGTACACTGCCCTGGCATATTAGGATGAACATTGCCCTGGAGACTGCAACTGCATTGGCATATCTTCATGAGTCTGAAATCATCCACAGAGATGTGAAAACCAATAATATTCTTCTTGATAGCCACTTTGTTGTGAAAGTCGCAGATTTTGGACTTTCGCGCCTTTTTCCAAACAATGTCACCCATGTTTCAACAGTTCCACAAGGAACTCCAGGTTACGTCGATCCGGAGTACCATGAATGCTACCAACTTACTGTCAAAAGTGATGTATATAGCTTTGGAGTTGTGTTGGTTGAGCTGATATCATCCTTGCCGGCTGTTGATATCACAAGGCATCGGCACGAAATCAATTTGTCCAACATGGCCATTAACAAGATTCAGAATCAGACCCTGCATGAGCTAGTAGACAAAAATCTTGGGTTTGATTCAGACTTGAAGGTAAGGAAGATGATAAATGCAGTAGCCGAGTTAGCATTTCAGTGCTTGCAGAGTTCCAAAGATTTGAGACCTTCTATGCAAGAAGTGGTGGATACTCTCAAGGATATACAGAGTGATGGCGAGTACAAAAGCAAAAGCCATGCTGAAGTTATGGATATATCATCAACAGCAGATGATGCTGTGTTGCTGAAGGATGATCCGCCTCCACCGTCACCGGCTTCAACAGTAGCAAGCAAATCTACAACACCAAATGCAAGTGGATAA 1992 0.4172 MILRISIHYNEPQLYIIITIIFLFSLATAVVSVNPKFLACTPRSCGNDINIKYPFWIPYEQDSFCGYPHFEITCKDKNPILRTSNYDLLVKDIDYSSSSFTAANVAVYEEKCPAPMHNYSFDQLPFTYSSENYNLSFFYNCTKKPIDYPTYEVDCAENATHNSFAVFHKEALEHINYTLNECQFMVNVPLNMNAVVNFSSLLRMNYTEILKMGFILNWTAPDCQYCENSGGHCGFDGDHFLCFCKDKSYLKSCGHGKQRGWKVVGIVAASVVGVLVLAIVAFLFYRRQKKTSYGMSYTQPRSMSSDPSSWKDTEKGSQYFGAHLFSYTELEEATNFFDPSRELGEGGFGTVYYGQLPDGRCIAVKRLYENNYRRVEQFMNEIEILTRLRHKNLVSLFGCTSRHSRELLLVYEYIANGTVADHLHGNRAKAGTLPWHIRMNIALETATALAYLHESEIIHRDVKTNNILLDSHFVVKVADFGLSRLFPNNVTHVSTVPQGTPGYVDPEYHECYQLTVKSDVYSFGVVLVELISSLPAVDITRHRHEINLSNMAINKIQNQTLHELVDKNLGFDSDLKVRKMINAVAELAFQCLQSSKDLRPSMQEVVDTLKDIQSDGEYKSKSHAEVMDISSTADDAVLLKDDPPPPSPASTVASKSTTPNASG 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31880g00003 663 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Stsc31880g00003 663 Gene3D Transferase(Phosphotransferase) domain 1 414 628 - -
Stsc31880g00003 663 Pfam Wall-associated receptor kinase C-terminal 155 247 IPR032872 -
Stsc31880g00003 663 CDD TM_EGFR-like 259 290 - -
Stsc31880g00003 663 CDD STKc_IRAK 343 612 - -
Stsc31880g00003 663 FunFam WAK1-OsWAK receptor-like cytoplasmic kinase (OsWAK-RLCK) 309 413 - -
Stsc31880g00003 663 SUPERFAMILY Protein kinase-like (PK-like) 318 612 IPR011009 -
Stsc31880g00003 663 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Stsc31880g00003 663 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 18 660 IPR044652 GO:0004672
Stsc31880g00003 663 FunFam Wall-associated receptor kinase-like 20 414 622 - -
Stsc31880g00003 663 Gene3D Phosphorylase Kinase; domain 1 309 413 - -
Stsc31880g00003 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Stsc31880g00003 663 ProSiteProfiles Protein kinase domain profile. 337 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31880g00003 663 MobiDBLite consensus disorder prediction 632 663 - -
Stsc31880g00003 663 SMART serkin_6 337 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31880g00003 663 Pfam Protein kinase domain 340 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31880g00003 Stsc-Chr31880 8188 11240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31880g00003 222 663 Receptor kinase-like Gene Family AT1G25390 54.867 6.26e-153 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Stsc31880g00003 Pkinase 2.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31880g00003 - - qsu:112024175 812.757