Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc31880g00002 ATGCCTCCTCCTCTTCCTTCTCTTCTCCCACTTCCTCTTTCTTTCATCAAGGTCTTTGCTATCTTTTCATCACTCTTGGTTCCAACGTATAGAGCTAGTGATGTTGGAGGTCACACAGCTTGTGCTCCTTTTACCTGTGGCAACTTCACAAACATTACTTACCCATTTTGGAATGGCAACCAACCAGATTACTGTGGCCACCCGAGGTTCAAGCTTGATTGCCAACAAGATCAAGTGACTATAAACATCAAGTCAGAGAAGTTTGATGTCATTGGCATCGATCAAAATAGTCAAAGTTTGAAGATTGCCAGGTCTGATTTATACAGTGATCCTTGTTCCATGGACAATACCAATGTGAGTTTGGATAATGATTTCTTCAAATTCACTTCCAATGATGATGACATAACTCTGGTATATGACTGTAACTCTCCTTCATATTGGCCTAATACAAACTTCAAATATCTTTCGATGTTTAATTGCTCCAAACATGGTGGTGATACTATTGCTGAATACTTAGTCCTGATGGAAAATTTGGGTGCTATTTTTGATCTGGGGTGTAAATTTATCATTGTTCCTGTCCTAGCAAAGGAGCTACAAAGTTCCAATAACGGTCCCTTGGATGATAAATATGTTATAGATAAAGGTTTTGAGGTTGGGTGGAGTGGAGTGAATGAAAACCAATGTGATAGTTGCAAACAATCTGGTGGGAGGTGTGGACACAATGCATCTTTAAATGAATTCATTTGCTTCTGCCATAATAATCAGCAACCATATGGTGGGGTTTGTAGCAGTAGTAGCCTGTCCCAGTCACCAGCACCATCAGAGCCATTGTCATCACCTTATCCTGATCCACTAAATTATCCAGATCAGGGTCCTAAAAGAAATCACAGAAGGATAGTAATCGGTTCAGGTGTAACAGCTGCAGTGATTGCAGTTGCCGGACTGTTGGCTACTCTTTTTATGTTTAAACTAGGACAAGGTGGTTTTGGTACTGTATACAAGGGAAACTTACCCAATGGTTCCAATGTAGCTGTCAAAATGTTGAATCAATCCAAAGGAAATGGAGAAGAATTCATTAACGAGGTAGCAAGCATTAGTAGAACTTCTCATGTTAATGTTGTCAACCTTCTTGGATTTTGCTTAGAAGGTAACAAGAAAGTTCTCATCTATGAGTTTATGTCTAATGGTTCCCTTGACAATTTTATTTGCAAAAAGGAACCTAAAACAACTCCACGCTTGAGTTGGGATAATCTGTATGAAATTGCTATAGGAATTGCAAGAGGATTAGAGTACTTGCATAGAGGATGCAACACTCAAATTTTGCATTTTGACATAAAACCACATAATATTCTTTTGGATGAAAGCTTTTGTCCAAAGATATCAGATTTCGGGCTAGCAAAGCTTTGTCCTAGAAAAGAAAGTCATGTTTCCATGTCCGAAACAAGAGGAACAATAGGGTACATAGCTCCAGAAGTATTTAATAGACATTTTGGTAGAGTTTCACATAAATCCGATGTTTATAGCTATGGAATGATGCTTATAGAAATGGTGGGGATGAAAGAGAACAACAAAATTGCAGAGACAAGTCAAACAAGTGAAAAGTACTTCCCTGATTGGATATACAAAAGGCTTGAACAAGGCATTCGAGAAGGACCTGCTGACGGAGAGTTATCAGCAGAGGAAAATGATGTTATCAAGAAAATGACAGTGGTGGGTTTATGGTGCATTCAACTAATTCCAAATGATAGACCAACAATGAGCAAAGTTGTAGAAATGTTGGAAGGCAGCATGAATTCCCTGGAAATGCCTCCAAGACCTGTTCTGTCTTCTCCTATAAGATCGGCGATAGAATCTTCTACTATTGTATCGTCGTTTGCTGAATCTTCTTCTATTGTTAATTAA 1902 0.387 MPPPLPSLLPLPLSFIKVFAIFSSLLVPTYRASDVGGHTACAPFTCGNFTNITYPFWNGNQPDYCGHPRFKLDCQQDQVTINIKSEKFDVIGIDQNSQSLKIARSDLYSDPCSMDNTNVSLDNDFFKFTSNDDDITLVYDCNSPSYWPNTNFKYLSMFNCSKHGGDTIAEYLVLMENLGAIFDLGCKFIIVPVLAKELQSSNNGPLDDKYVIDKGFEVGWSGVNENQCDSCKQSGGRCGHNASLNEFICFCHNNQQPYGGVCSSSSLSQSPAPSEPLSSPYPDPLNYPDQGPKRNHRRIVIGSGVTAAVIAVAGLLATLFMFKLGQGGFGTVYKGNLPNGSNVAVKMLNQSKGNGEEFINEVASISRTSHVNVVNLLGFCLEGNKKVLIYEFMSNGSLDNFICKKEPKTTPRLSWDNLYEIAIGIARGLEYLHRGCNTQILHFDIKPHNILLDESFCPKISDFGLAKLCPRKESHVSMSETRGTIGYIAPEVFNRHFGRVSHKSDVYSYGMMLIEMVGMKENNKIAETSQTSEKYFPDWIYKRLEQGIREGPADGELSAEENDVIKKMTVVGLWCIQLIPNDRPTMSKVVEMLEGSMNSLEMPPRPVLSSPIRSAIESSTIVSSFAESSSIVN 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc31880g00002 633 Gene3D Phosphorylase Kinase; domain 1 324 393 - -
Stsc31880g00002 633 Gene3D Transferase(Phosphotransferase) domain 1 394 602 - -
Stsc31880g00002 633 Pfam Protein tyrosine and serine/threonine kinase 323 593 IPR001245 GO:0004672|GO:0006468
Stsc31880g00002 633 MobiDBLite consensus disorder prediction 262 293 - -
Stsc31880g00002 633 ProSitePatterns Serine/Threonine protein kinases active-site signature. 440 452 IPR008271 GO:0004672|GO:0006468
Stsc31880g00002 633 ProSiteProfiles Protein kinase domain profile. 318 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31880g00002 633 PANTHER RUST RESISTANCE KINASE LR10-RELATED 320 613 IPR045874 GO:0004672
Stsc31880g00002 633 CDD STKc_IRAK 324 595 - -
Stsc31880g00002 633 SUPERFAMILY Protein kinase-like (PK-like) 323 625 IPR011009 -
Stsc31880g00002 633 Pfam Wall-associated receptor kinase galacturonan-binding 41 104 IPR025287 GO:0030247
Stsc31880g00002 633 SMART serkin_6 318 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc31880g00002 633 FunFam PR5-like receptor kinase 393 604 - -
Stsc31880g00002 633 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524
Stsc31880g00002 633 Pfam Wall-associated receptor kinase C-terminal 185 253 IPR032872 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc31880g00002 Stsc-Chr31880 3555 7313 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc31880g00002 36 631 Receptor kinase-like Gene Family AT1G66910 41.758 6.21e-151 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Stsc31880g00002 PK_Tyr_Ser-Thr 4.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc31880g00002 - - gmx:102665158 669.848